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ZIRC
ZFIN ID: ZDB-GENE-010201-3
Gene Name: SIX homeobox 5
Gene Symbol: six5
Sequence Ontology ID : SO:0000704

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Previous Name: six4.3

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu588]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020423Tg Transgenic Insertion Unknown Unknown DNA
la027949Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH six5 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    branchiootorenal syndrome Branchiootorenal syndrome 2 610896
    DISEASE ASSOCIATED WITH six5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA six5-201 (1) 2454
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM six5 No data available
    MARKER RELATIONSHIPS
    six5Contained in: [BAC] DKEY-3B8 (1) (order this), DKEY-149J18 (1) (order this)
    six5Encodes: [EST] eu588 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131720 (1) 2524bp
    Genomic GenBank:AL954841 (1) 149277bp
    Select Tool
    Polypeptide UniProtKB:F6NWW8 (1) 798aa
    Sequence Clusters UniGene:82594 (1)
    Sequence Information (all 12)
    ORTHOLOGY for six5 (Chr: 18)
    CITATIONS (26)