ZFIN ID: ZDB-GENE-001030-2
Gene Name: paired box 5
Gene Symbol: pax5
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity; involved in vestibular receptor cell development and vestibular reflex; predicted to localize to the nucleus; orthologous to human PAX5 (paired box 5).
GENE EXPRESSION
All Expression Data: 33 figures from 23 publications
Directly Submitted Expression Data: 7 figures (10 images) from Thisse et al., 2005 [eu596]
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: 4 figures from Kwak et al., 2006
Observed in:
DISEASE ASSOCIATED WITH pax5 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
{Leukemia, acute lymphoblastic, susceptibility to, 3} 615545
DISEASE ASSOCIATED WITH pax5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process vestibular receptor cell development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001523 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR022130 (1)
  • InterPro:IPR036388 (1)
  • PROSITE:PS00034 (1)
  • PROSITE:PS51057 (1)
  • Pfam:PF00292 (1)
  • Pfam:PF12403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pax5-201 (1) 1188
    pax5-202 (1) 1675
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pax5 No data available
    MARKER RELATIONSHIPS
    pax5Contained in: [BAC] CH211-134C9 (1) (order this)
    pax5Encodes: [EST] eu596 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131638 (1) 1675bp
    Genomic GenBank:BX511134 (1) 188290bp
    Select Tool
    Polypeptide UniProtKB:F1QGF8 (1) 396aa
    Sequence Clusters UniGene:81270 (1)
    Sequence Information (all 17)
    OTHER pax5 GENE PAGES
  • Alliance (1)
  • Gene:60636 (1)
  • VEGA:OTTDARG00000019464 (1)
  • Ensembl(GRCz11):ENSDARG00000037383 (2)
  • ORTHOLOGY for pax5 (Chr: 1)
    CITATIONS (66)