ZFIN ID: ZDB-GENE-000822-2
Gene Name: homeobox C1a
Gene Symbol: hoxc1a
Sequence Ontology ID : SO:0000704

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Previous Name: z-42

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Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 3 publications
Directly Submitted Expression Data: 6 figures (15 images) from Thisse et al., 2005 [eu661]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24386 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37766 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxc1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxc1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxc1a-001 (1) 8400
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM hoxc1a No data available
    MARKER RELATIONSHIPS
    hoxc1aContained in: [BAC] DKEY-81P22 (1) (order this)
    hoxc1aEncodes: [EST] eu661 (1)
    [cDNA] MGC:194107 (1) (order this), MGC:194110 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131531 (1) 909bp
    Genomic GenBank:BX005254 (1) 160012bp
    Select Tool
    Polypeptide UniProtKB:B3DHA1 (1) 302aa
    Sequence Clusters UniGene:83047 (1)
    Sequence Information (all 24)
    OTHER hoxc1a GENE PAGES
  • Alliance (1)
  • Gene:58046 (1)
  • VEGA:OTTDARG00000016401 (1)
  • Ensembl(GRCz11):ENSDARG00000070337 (1)
  • ORTHOLOGY for hoxc1a (Chr: 23)
    CITATIONS (30)