ZFIN is now using GRCz12tu for Genomic Data
Gene
hoxc6b
- ID
- ZDB-GENE-000822-1
- Name
- homeobox C6b
- Symbol
- hoxc6b Nomenclature History
- Previous Names
-
- hoxy6
- Type
- protein_coding_gene
- Location
- Chr: 11 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including margin; musculature system; neuroectoderm; paraxial mesoderm; and tail bud. Orthologous to human HOXC6 (homeobox C6).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 10 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu500 (17 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR001827 | Homeobox protein, antennapedia type, conserved site |
| Conserved_site | IPR017970 | Homeobox, conserved site |
| Domain | IPR001356 | Homeodomain |
| Domain | IPR020479 | Homeodomain, metazoa |
| Family | IPR050296 | Antennapedia-type homeobox |
| Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Antennapedia-type homeobox | Homedomain-like superfamily | Homeobox, conserved site | Homeobox protein, antennapedia type, conserved site | Homeodomain | Homeodomain, metazoa |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q9PWM5 | InterPro | 227 | ||||||
| UniProtKB:A0A8M1P8V2 | InterPro | 214 | ||||||
| UniProtKB:A0A2R8QUV2 | InterPro | 228 | ||||||
| UniProtKB:A0A2R8Q006 | InterPro | 227 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hoxc6b-201
(1)
|
Ensembl | 1,420 nt | ||
| mRNA |
hoxc6b-203
(1)
|
Ensembl | 781 nt | ||
| ncRNA |
hoxc6b-202
(1)
|
Ensembl | 1,335 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers