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ZIRC
ZFIN ID: ZDB-GENE-000822-1
Gene Name: homeobox C6b
Gene Symbol: hoxc6b
Sequence Ontology ID : SO:0001217

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Previous Name: hoxy6

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification. Predicted to localize to the nucleus.  ...
GENE EXPRESSION
All Expression Data: 10 figures from 5 publications
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2005 [eu500]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa21828 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxc6b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxc6b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 7)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA hoxc6b-003 (1) 624
    mRNA hoxc6b-201 (1) 1215
    ncRNA hoxc6b-202 (1) 1128
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM hoxc6b No data available
    MARKER RELATIONSHIPS
    hoxc6b Encodes: [EST] eu500 (1), wz12007
    [cDNA] MGC:195134 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131530 (1) 684 bp
    Genomic GenBank:AF071266 1972 bp
    Polypeptide UniProtKB:A0A2R8QUV2 (1) 228 aa
    Sequence Clusters UniGene:5729 (1)
    Sequence Information (all 29)
    ORTHOLOGY for hoxc6b ( Chr: 11 )
    CITATIONS (36)