ZFIN ID: ZDB-GENE-000208-23
Gene Name: collagen, type XI, alpha 2
Gene Symbol: col11a2
Sequence Ontology ID : SO:0000704

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Previous Name: col11a1 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 6 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: 6 figures from Baas et al., 2009
Observed in:
DISEASE ASSOCIATED WITH col11a2 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
autosomal dominant nonsyndromic deafness 13 Deafness, autosomal dominant 13 601868
autosomal recessive nonsyndromic deafness 53 Deafness, autosomal recessive 53 609706
fibrochondrogenesis Fibrochondrogenesis 2 614524
otospondylomegaepiphyseal dysplasia Otospondylomegaepiphyseal dysplasia, autosomal recessive 215150
Stickler syndrome Otospondylomegaepiphyseal dysplasia, autosomal dominant 184840
DISEASE ASSOCIATED WITH col11a2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cartilage morphogenesis (more)
Cellular Component collagen trimer (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000885 (1)
  • InterPro:IPR001791 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR013320 (1)
  • PROSITE:PS51461 (1)
  • Pfam:PF01391 (1)
  • Pfam:PF01410 (1)
  • Pfam:PF02210 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col11a2-001 (1) 4052
    col11a2-002 (1) 5476
    col11a2-003 (1) 1565
    col11a2-004 (1) 6544
    ottdart00000044276 (1) 6965
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col11a2 No data available
    MARKER RELATIONSHIPS
    col11a2Contained in: [BAC] CH73-198N16 (1) (order this), CH211-51F10 (1) (order this)
    [Fosmid] CH1073-455J15 (1) (order this)
    [PAC] BUSM1-12F11 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001079992 (1) 5345bp
    Genomic GenBank:BX510994 186973bp
    Select Tool
    Polypeptide UniProtKB:Q1LWX5 (1) 1877aa
    Sequence Clusters UniGene:108681 (1)
    Sequence Information (all 50)
    OTHER col11a2 GENE PAGES
  • Alliance (1)
  • Gene:561679 (1)
  • VEGA:OTTDARG00000002249 (1)
  • VEGA:OTTDARG00000031776 (1)
  • Ensembl(GRCz11):ENSDARG00000012422 (2)
  • ORTHOLOGY for col11a2 (Chr: 19)
    CITATIONS (36)