RNA expression

Expressed Gene	Structure	Conditions	Figures
amot	blood vessel endothelial cell	standard conditions	Fig. 6 from Zheng et al., 2009
amotl1	blood vessel endothelial cell	standard conditions	Fig. 6 from Zheng et al., 2009
apela	notochord	control	Fig. 3  from Helker et al., 2015
apln	blastema regenerating fin	amputation: fin, hypoxia, chemical treatment: cobalt dichloride	Fig. 5 from Eyries et al., 2008
aplnra	blastema regenerating fin	amputation: fin, hypoxia, chemical treatment: cobalt dichloride	Fig. 5 from Eyries et al., 2008
aplnrb	blastema regenerating fin	amputation: fin, hypoxia, chemical treatment: cobalt dichloride	Fig. 5 from Eyries et al., 2008
bmp2b	maxilla cranial neural crest cell olfactory region cranial neural crest cell oral region ectoderm	standard conditions	Fig. 7  from Swartz et al., 2011
bmp4	maxilla cranial neural crest cell olfactory region cranial neural crest cell oral region ectoderm	standard conditions	Fig. 7  from Swartz et al., 2011
brpf1	pharyngeal arch 1 pharyngeal arch 2 pharyngeal arch 3-7	standard conditions	Fig. 3  from Laue et al., 2008
cahz	whole organism	standard conditions	2  from Greenhough et al., 2018
	whole organism	hypoxia	2  from Greenhough et al., 2018
cdh5	blood vessel endothelial cell cell junction dorsal aorta bicellular tight junction intersegmental vessel cell junction posterior cardinal vein pronephros	standard conditions	10 figures from 8 publications
col22a1	caudal fin cranial vasculature stromal cell median fin fold	standard conditions	Fig. 2  from Ton et al., 2018 Fig. 3  from Huang et al., 2009
ctsk	Meckel's cartilage chondrocyte	control	Fig. 5  from Petrey et al., 2012
cttnl	endothelial cell	standard conditions	Fig. S7 from Kaluza et al., 2011
cyp1a	endocardium epidermis liver myocardium cell vascular endothelium	chemical treatment: pharmaceutical	Fig. 2,  Fig. 3 from Incardona et al., 2011
dab2	posterior cardinal vein unspecified	control	Fig. 6 from Cermenati et al., 2013 Fig. 8 from Zou et al., 2011
dlc	somite	standard conditions	Fig. S8 from Kobayashi et al., 2014
dld	somite	standard conditions	Fig. S8 from Kobayashi et al., 2014
dll4	regenerating tissue	chemical treatment by environment: environmental contaminant, amputation: caudal fin	Fig. 2 from Baek et al., 2017
dock1	dorsal aorta posterior cardinal vein	standard conditions	Fig. 2 from Epting et al., 2010
dre-mir-30b	endothelial cell	standard conditions	Fig. S1 from Jiang et al., 2013
dre-mir-30c	endothelial cell	standard conditions	Fig. S1 from Jiang et al., 2013
drl	endothelial cell	standard conditions	Fig. 3  from Kobayashi et al., 2019 Fig. 1  from Pimtong et al., 2014
drll.1	endothelial cell	standard conditions	Fig. 1  from Pimtong et al., 2014
drll.2	endothelial cell	standard conditions	Fig. 1  from Pimtong et al., 2014
drll.3	endothelial cell	standard conditions	Fig. 1  from Pimtong et al., 2014
dusp6	compact layer of ventricle heart endothelial cell myocardium	standard conditions	Fig. 1  from Missinato et al., 2018
	heart endothelial cell myocardium	resection: cardiac ventricle	Fig. 1  from Missinato et al., 2018
efnb2a	caudal artery intersegmental vessel whole organism	control	Fig. 1,  Fig. 6 from Esser et al., 2018 Fig. 1 from Aranguren et al., 2011
	caudal artery caudal vein plexus	chemical treatment by environment: DMH1	Fig. 6 from Esser et al., 2018
egfl7	unspecified	control	Fig. 8 from Zou et al., 2011
egr1	regenerating fin unspecified	physical alteration: anatomical structure	Fig. 7 ,  Fig. 8  from Huang et al., 2008
elnb	bulbus arteriosus	standard conditions	Fig. 3 from Faucherre et al., 2020
epas1b	blood vasculature notochord	standard conditions	Fig. 3  from Rojas et al., 2007
ephb2a	dorsal aorta	control	Fig. S9 from Cvejic et al., 2011
ephb4a	caudal vein plexus posterior cardinal vein endothelial cell whole organism	control	Fig. 2,  Fig. 6 from Esser et al., 2018 Fig. 1 from Aranguren et al., 2011
	caudal vein plexus	chemical treatment by environment: DMH1	Fig. 6 from Esser et al., 2018
etsrp	whole organism	control	Fig. 3 from Baltrunaite et al., 2017
	whole organism	cancer xenotransplantation	Fig. 3 from Baltrunaite et al., 2017
fgf10a	maxilla cranial neural crest cell olfactory region cranial neural crest cell oral region ectoderm	standard conditions	Fig. 7  from Swartz et al., 2011
fgfr1a	endothelial cell	control	Fig. 1  from De Smet et al., 2014
fgfr2	endothelial cell	control	Fig. 1  from De Smet et al., 2014
fgfr3	endothelial cell	control	Fig. 1  from De Smet et al., 2014
fgfr4	endothelial cell	control	Fig. 1  from De Smet et al., 2014
fli1	anterior cerebral vein axial vasculature common cardinal vein dorsal aorta endothelial cell heart primordium intersegmental vessel mid cerebral vein posterior cardinal vein whole organism	standard conditions	Fig. 5  from Eve et al., 2017 Fig. S5  from Wakayama et al., 2015 Fig. 4  from Oehlers et al., 2011 Fig. 6 from Cermenati et al., 2008 Fig. 6,  Fig. 7 from Cirone et al., 2008 Fig. 6 from Potente et al., 2007
	common cardinal vein mid cerebral vein whole organism	chemical treatment: O-(chloroacetylcarbamoyl)fumagillol	Fig. 4  from Oehlers et al., 2011 Fig. 7 from Cirone et al., 2008
fli1rs	whole organism	control	Fig. 3 from Baltrunaite et al., 2017
	whole organism	cancer xenotransplantation	Fig. 3 from Baltrunaite et al., 2017
flt4	posterior cardinal vein endothelial cell whole organism	control	Fig. 6 from Cermenati et al., 2013 Fig. 1 from Aranguren et al., 2011
fmnl1b	endothelial cell	standard conditions	Fig. S5  from Wakayama et al., 2015
fmnl2a	endothelial cell	standard conditions	Fig. S5  from Wakayama et al., 2015
fmnl2b	endothelial cell	standard conditions	Fig. S5  from Wakayama et al., 2015
fmnl3	endothelial cell	standard conditions	Fig. S5  from Wakayama et al., 2015
gata1a	angioblastic mesenchymal cell lateral mesoderm whole organism	standard conditions	Fig. 5  from Eve et al., 2017 Fig. 2 from Hart et al., 2007
gipc1	blood vasculature brain cardiovascular system caudal vein plexus central nervous system dorsal aorta posterior cardinal vein primordial vasculature	standard conditions	Fig. S1 from Chittenden et al., 2006 Fig. 4 from Wang et al., 2006
gnat2	whole organism	control	Fig. 2 from Alvarez et al., 2010
	whole organism	chemical treatment: glucose	Fig. 2 from Alvarez et al., 2010
gpr182	dorsal aorta ventral region posterior cardinal vein	standard conditions	Fig. 1  from Kwon et al., 2020
gpr183a	ventral wall of dorsal aorta	control	Fig. S3  from Zhang et al., 2015
gprc5ba	whole organism	standard conditions	2  from Greenhough et al., 2018
	whole organism	hypoxia	2  from Greenhough et al., 2018
gprc5bb	whole organism	standard conditions	2  from Greenhough et al., 2018
	whole organism	hypoxia	2  from Greenhough et al., 2018
gprc5c	whole organism	standard conditions	2  from Greenhough et al., 2018
	whole organism	hypoxia	2  from Greenhough et al., 2018
hbae1.1	post-vent region erythroid lineage cell	control	Fig. 2  from Jin et al., 2009
hbbe1.1	whole organism	standard conditions	Fig. 5  from Eve et al., 2017
hey2	whole organism	control	Fig. 1 from Aranguren et al., 2011
	regenerating tissue	chemical treatment by environment: environmental contaminant, amputation: caudal fin	Fig. 2 from Baek et al., 2017
hif1ab	blood vasculature	standard conditions	Fig. 2  from Rojas et al., 2007
hmgb1a	blood vessel	control	Fig. 4 from Fang et al., 2014
	blood vessel	physical alteration: spinal cord	Fig. 4 from Fang et al., 2014
hsd3b	interrenal gland interrenal primordium	standard conditions	Fig. 2 ,  Fig. 6 ,  Fig. 7  from Liu et al., 2006
icam3	posterior cardinal vein primordial hindbrain channel (not) ventricular endocardium	standard conditions	Fig. 1  from Hsieh et al., 2018
igfbp7	dorsal aorta intersegmental vessel medial floor plate vascular endothelium	standard conditions	Fig. 4 from Hooper et al., 2009
isl2a	(not) blood vasculature (not) cardiovascular system	standard conditions	Fig. S1 from Chittenden et al., 2006
jag1a	regenerating tissue	chemical treatment by environment: environmental contaminant, amputation: caudal fin	Fig. 2 from Baek et al., 2017
jag2b	regenerating tissue	chemical treatment by environment: environmental contaminant, amputation: caudal fin	Fig. 2 from Baek et al., 2017
jam2a	somite	standard conditions	Fig. 3 from Kobayashi et al., 2014
jam3b	hematopoietic multipotent progenitor cell	standard conditions	Fig. S1 from Kobayashi et al., 2019
jarid2a	(not) vasculature	standard conditions	Fig. 5  from Singh et al., 2017
junba	endothelial cell whole organism	standard conditions	Fig. 2  from Kiesow et al., 2015
junbb	endothelial cell whole organism	standard conditions	Fig. 2  from Kiesow et al., 2015
kdrl	endothelial cell eye intersegmental vessel unspecified whole organism	standard conditions	Fig. 4  from Ward et al., 2019 Fig. 3 from Baltrunaite et al., 2017 Fig. 4  from Singh et al., 2017 Fig. 2  from Kiesow et al., 2015 Fig. 8 from Zou et al., 2011
	blood vessel endothelial cell	chemical treatment: vascular endothelial growth factor receptor antagonist	Fig. 4  from Monteiro et al., 2016
	whole organism	cancer xenotransplantation	Fig. 3 from Baltrunaite et al., 2017
klf2a	heart	control	Fig. 4 from Jiménez-Amilburu et al., 2015
lcp1	ventral wall of dorsal aorta myeloid cell	control	Fig. 4  from Jin et al., 2009
lhx6a	maxilla cranial neural crest cell	standard conditions	Fig. 5  from Swartz et al., 2011
lmo2	regenerating fin	resection: caudal fin	Fig. 5 from Meng et al., 2016
lrrc15	endothelial cell	standard conditions	Fig. 3  from Kobayashi et al., 2019
lyve1b	posterior cardinal vein vascular lymphangioblast	control	Fig. 6 from Cermenati et al., 2013
mcamb	blood vessel	control	Fig. 4 from Liu et al., 2016
	blood vessel	transection: spinal cord	Fig. 4 from Liu et al., 2016
meox1	dorsal aorta somite	standard conditions	Fig. 2 from Nguyen et al., 2014
mir30a	anterior cardinal vein dorsal aorta endothelial cell neural tube notochord pronephric duct	standard conditions	Fig. S1 from Jiang et al., 2013
mir30d	endothelial cell	standard conditions	Fig. S1 from Jiang et al., 2013
mir30e-2	endothelial cell	standard conditions	Fig. S1 from Jiang et al., 2013
mir126a	whole organism	standard conditions	Fig. 4 from Zou et al., 2011
mir126b	whole organism	standard conditions	Fig. 4 from Zou et al., 2011
mlc1	astrocyte Muller cell astrocyte end-foot	standard conditions	Fig. 4 from Sirisi et al., 2014
msx1a	maxilla cranial neural crest cell olfactory region cranial neural crest cell	standard conditions	Fig. 5  from Swartz et al., 2011
mthfd2	whole organism	chemical treatment by injection: oxidised phospholipid	Fig. 6 from Hitzel et al., 2018
myb	hematopoietic system kidney pronephros ventral wall of dorsal aorta	standard conditions	Fig. 1,  Fig. 3,  Fig. 6 from Jin et al., 2007
myod1	somite	standard conditions	Fig. 5  from Eve et al., 2017
ncor2	endothelial cell hematopoietic stem cell	standard conditions	Fig. 1 from Wei et al., 2014
nostrin	whole organism	control	Fig. 1 from Kovacevic et al., 2012
notch1b	regenerating tissue	chemical treatment by environment: environmental contaminant, amputation: caudal fin	Fig. 2 from Baek et al., 2017
notch3	central artery pericyte dorsal aorta pericyte intersegmental vessel pericyte spinal cord	standard conditions	Fig. 2  from Wang et al., 2014
npas4a	caudal vein plexus posterior cardinal vein	standard conditions	Fig. 7 from Esser et al., 2017
ntn1a	horizontal myoseptum muscle pioneer neural tube somite	control	Fig. 3,  text only from Wilson et al., 2006
ntn4	blood vessel blood vessel endothelial cell dorsal aorta intersegmental vessel lateral olfactory tract ocular blood vessel posterior cardinal vein retina	control	Fig. 1,  Fig. S1 from Lambert et al., 2012
osr1	maxilla cranial neural crest cell	standard conditions	Fig. 5  from Swartz et al., 2011
osr2	maxilla cranial neural crest cell olfactory region cranial neural crest cell	standard conditions	Fig. 5  from Swartz et al., 2011
pak1	unspecified	control	Fig. 8 from Zou et al., 2011
pax2a	lateral mesoderm	control	Fig. 2 from Hart et al., 2007
pax9	maxilla cranial neural crest cell	standard conditions	Fig. 5  from Swartz et al., 2011
pcna	renal glomerulus	standard conditions	Fig. 2 from Leung et al., 2005
pdgfrb	central artery pericyte cranial blood vessel pericyte cranial vasculature dorsal aorta hyaloid vessel pericyte intersegmental vessel optic artery pericyte pharyngeal arch cranial neural crest cell primordial hindbrain channel whole organism	standard conditions	Fig. 5  from McCarthy et al., 2016 Fig. 2  from Kok et al., 2015 Fig. 1 ,  Fig. 2 ,  Fig. 4 ,  Fig. 6 ,  Fig. S1  from Wang et al., 2014
phkg1a	dorsal aorta head (not) intersegmental vessel	standard conditions	Fig. S8 from Camus et al., 2012
piezo2a.2	blood vessel endothelium bulbus arteriosus endothelial cell endocardium	standard conditions	Fig. 1 from Faucherre et al., 2020
plod1a	whole organism	standard conditions	2  from Greenhough et al., 2018
	whole organism	hypoxia	2  from Greenhough et al., 2018
podxl2	angiogenic sprout apical plasma membrane intersegmental vessel	standard conditions	Fig. 6  from Sauteur et al., 2017 Fig. 8 from Hayashi et al., 2013
prox1a	whole organism	control	Fig. 2 from Aranguren et al., 2011
ptger3	endothelial cell	standard conditions	Fig. 1 from Chen et al., 2017
pth1r	anatomical structure	standard conditions	Fig. 1 from Gray et al., 2013
rag1	thymus	standard conditions	Fig. S7 from Cvejic et al., 2011 Fig. 1,  Fig. 2,  Fig. 5 from Jin et al., 2007
reck	blood vessel endothelial cell central artery metencephalic artery pharyngeal arch 3-7 primordial hindbrain channel	standard conditions	Fig. 5  from Ulrich et al., 2016
robo4	blood vasculature cardiovascular system	standard conditions	Fig. S1 from Chittenden et al., 2006
runx1	whole organism	standard conditions	Fig. 5  from Eve et al., 2017
s1pr1	caudal vein plexus central nervous system dorsal aorta endothelial cell vasculature	standard conditions	Fig. 2 from Mendelson et al., 2013 Fig. 4  from Ben Shoham et al., 2012
s1pr2	endothelial cell	standard conditions	Fig. 2 from Mendelson et al., 2013
s1pr3a	endothelial cell	standard conditions	Fig. 2 from Mendelson et al., 2013
sec14l8	endothelial cell	standard conditions	Fig. 1  from Gong et al., 2019
sema3aa	eye	control	Fig. 4  from Ward et al., 2019
sema3ab	eye	control	Fig. 4  from Ward et al., 2019
sema3fa	eye	control	Fig. 4  from Ward et al., 2019
sema3fb	eye	control	Fig. 4  from Ward et al., 2019
shha	oral region ectoderm	standard conditions	Fig. 7  from Swartz et al., 2011
sirt1	whole organism	standard conditions	Fig. 4 from Potente et al., 2007
spi1b	whole organism	standard conditions	Fig. 5  from Eve et al., 2017
syt2a	endothelial cell whole organism	standard conditions	Fig. 2  from Kiesow et al., 2015
tal1	whole organism	standard conditions	Fig. 5  from Eve et al., 2017
tcf7l2	blood vessel brain eye gill gut heart integument kidney muscle pancreas	standard conditions	Fig. 2  from Facchinello et al., 2017
tek	regenerating fin	resection: caudal fin	Fig. 5 from Meng et al., 2016
tg	thyroid follicle	control	Fig. 7 from Opitz et al., 2011
tgfb1a	blood vessel endothelial cell	chemical treatment: vascular endothelial growth factor receptor antagonist	Fig. 4  from Monteiro et al., 2016
tgfb1b	blood vessel endothelial cell	chemical treatment: vascular endothelial growth factor receptor antagonist	Fig. 4  from Monteiro et al., 2016
tgfb2	maxilla cranial neural crest cell olfactory region cranial neural crest cell	standard conditions	Fig. 7  from Swartz et al., 2011
tgfb3	maxilla cranial neural crest cell olfactory region cranial neural crest cell oral region ectoderm	standard conditions	Fig. 7  from Swartz et al., 2011
tgfbr3	notochord somite spinal cord anatomical region trunk vasculature anatomical region	control	Fig. 3 ,  Fig. 5  from Kamaid et al., 2015
thsd7aa	central nervous system	standard conditions	Fig. 5  from Wang et al., 2011
tjp1a	whole organism	control	Fig. 2 from Alvarez et al., 2010
	endothelial cell whole organism	chemical treatment by gavage: bexarotene, chemical treatment by injection: doxorubicin	Fig. 6 from Ma et al., 2020 Fig. 2 from Alvarez et al., 2010
tjp1b	endothelial cell	chemical treatment by gavage: bexarotene, chemical treatment by injection: doxorubicin	Fig. 6 from Ma et al., 2020
tln1	optic furrow periocular mesenchyme retina retinal pigmented epithelium	standard conditions	Fig. 5  from James et al., 2016
tmem88a	whole organism	standard conditions	Fig. 3 from Eve et al., 2017
tmem88b	whole organism	standard conditions	Fig. 7  from Eve et al., 2017
tmem184a	post-vent vasculature endothelial cell	standard conditions	Fig. 1  from Farwell et al., 2017
	post-vent vasculature endothelial cell	amputation: caudal fin	Fig. 1  from Farwell et al., 2017
tp53	(not) vascular endothelium	control	Fig. 4  from Espín et al., 2013
vegfaa	eye whole organism	standard conditions	Fig. 4  from Ward et al., 2019 Fig. 5,  Fig. 7  from Shi et al., 2014 Fig. 6  from Xu et al., 2012 Fig. 2 from Alvarez et al., 2010
	whole organism	chemical treatment: glucose	Fig. 2 from Alvarez et al., 2010
vegfab	eye whole organism	control	Fig. 4  from Ward et al., 2019 Fig. 4  from Oehlers et al., 2011
	whole organism	chemical treatment: pharmaceutical	Fig. 4  from Oehlers et al., 2011
vegfc	eye	control	Fig. 4  from Ward et al., 2019

Protein expression

Antibody	Antigen Genes	Structure	Conditions	Figures
Ab1-hoxc9		brain posterior cardinal vein	standard conditions	Fig. S6 from Stoll et al., 2011
Ab2-plcg1		dorsal aorta intersegmental vessel	standard conditions	Fig. S1  from Shin et al., 2016
Ab1-mef2		cardiac muscle cell regenerating tissue cardiac muscle cell	resection: cardiac ventricle	Fig. 5  from Missinato et al., 2018 Fig. 3,  Fig. 4 from Missinato et al., 2015
Ab2-mapk14		endothelial cell	standard conditions	Fig. S1  from Shin et al., 2016
Ab3-lcp1		lateral zone of dorsal telencephalon leukocyte ventral wall of dorsal aorta myeloid cell	control	Fig. 2,  Fig. 3 from Duy et al., 2017 Fig. 4  from Jin et al., 2009
Ab2-lcp1		macrophage neutrophil	viral treatment: Sprivirus cyprinus	Fig. 1,  Fig. 5 from Varela et al., 2014
Ab9-mapk		endothelial cell	chemical treatment by environment: DAPT	Fig. 7  from Shin et al., 2016
Ab1-nrp1		heart vasculature ventricular endocardium	control	Fig. 2 from Lowe et al., 2019
Ab3-smad2		ceratohyal cartilage chondrocyte Meckel's cartilage chondrocyte	standard conditions	Fig. 4,  Fig. 5 from Flanagan-Steet et al., 2016
Ab10-prox1		common cardinal vein facial lymphatic sprout corpuscles of Stannius cranial blood vessel endothelial cell lymphangiogenic sprout muscle pioneer posterior cardinal vein endothelial cell	standard conditions	Fig. 3 ,  Fig. 4 ,  Fig. 7  from Shin et al., 2016
Ab1-col2a		(not) ceratohyal cartilage (not) palatoquadrate cartilage	chemical treatment: pharmaceutical	Fig. 4  from Ning et al., 2013
zn-8		caudal fin axon pharyngeal pouch pharyngeal pouch 1 pharyngeal pouch 2 pharyngeal pouch 3 pharyngeal pouch 4 pharyngeal pouch 5 sensory neuron axon	standard conditions	Fig. 2 from Lin et al., 2013 Fig. 8  from Huang et al., 2009 Fig. 4 from Kucenas et al., 2009
Ab4-GFP		ceratohyal cartilage ethmoid cartilage hyaloid vessel optic furrow palatoquadrate cartilage pharyngeal arch chondroblast	standard conditions	Fig. 3 ,  Fig. 4 ,  Fig. 5 ,  Fig. 7  from Yang et al., 2022 Fig. 4 ,  Fig. 5  from James et al., 2016
Ab5-GFP		vasculature	standard conditions	Fig. 1  from Farwell et al., 2017
Ab-A4.1025		muscle muscle cell somite	standard conditions	Fig. S5 from Nguyen et al., 2014 Fig. S4  from Hinits et al., 2012
Ab2-mapk		compact layer of ventricle blood vessel	standard conditions	Fig. 2  from Missinato et al., 2018
Ab1-ctsk		chondrocyte intracellular anatomical structure Meckel's cartilage chondrocyte palatoquadrate cartilage chondrocyte	standard conditions	Fig. 6 from Flanagan-Steet et al., 2016 Fig. 5  from Petrey et al., 2012
Ab2-cspg4		chondrocyte	control	Fig. 6 ,  Fig. 7  from Flanagan-Steet et al., 2018
Ab7-mapk		somite vascular cord	standard conditions	Fig. 5  from Kobayashi et al., 2019 Fig. 3  from Christie et al., 2010
Ab1-aldh1a2		regenerating tissue endocardium	cryoablation: heart	Fig. 4  from Marín-Juez et al., 2019
Ab3-dag1		somite myofibril	standard conditions	Fig. 3 from Wood et al., 2011
Ab1-cldn5		cranial blood vessel	standard conditions	Fig. 3  from Wang et al., 2014
Ab2-pcna		endocardium lateral zone of dorsal telencephalon	standard conditions	Fig. 3 from Duy et al., 2017 Fig. S8  from Cheng et al., 2016
Ab3-lcp1		lateral zone of dorsal telencephalon leukocyte	chemical treatment by environment: pentetrazol	Fig. 2,  Fig. 3 from Duy et al., 2017
zn-12		Rohon-Beard neuron	standard conditions	Fig. 5  from Krueger et al., 2011
Ab5-prox1		vascular lymphangioblast	standard conditions	Fig. 4  from Kärpanen et al., 2017
Ab1-cav1		regenerating tissue endocardium	cryoablation: cardiac ventricle	Figure 1  from Grivas et al., 2020
Ab2-pcna		lateral zone of dorsal telencephalon leukocyte	chemical treatment by environment: pentetrazol	Fig. 3 from Duy et al., 2017
zrf-1		glial cell (sensu Vertebrata)	standard conditions	Fig. S3  from Fleming et al., 2013
Ab1-abcb1/4/5		(not) brain vasculature central nervous system vascular endothelium liver	standard conditions	Fig. 3 ,  Fig. S2  from Fleming et al., 2013
Ab1-vegfc		blastema	physical alteration: anatomical structure	Fig. 5  from Khatib et al., 2010
Ab1-cav1		bulbus arteriosus endocardium epicardium heart valve heart vasculature	standard conditions	Figure 1  from Grivas et al., 2020
zns-5		caudal fin osteoblast	standard conditions	Fig. 7  from Huang et al., 2009
Ab-F59		heart regenerating tissue cardiac muscle cell	resection: cardiac ventricle	Fig. 6 from Missinato et al., 2015
Ab5-GFP		vasculature	amputation: caudal fin	Fig. 1  from Farwell et al., 2017
Ab-MF20		myocardium	standard conditions	Fig. 5  from Cheng et al., 2016
Ab1-plcg1		dorsal aorta intersegmental vessel posterior cardinal vein	standard conditions	Fig. S1  from Shin et al., 2016
Ab1-gipc		dorsal aorta gut myotome posterior cardinal vein spinal cord thoracic duct vascular lymphangioblast	standard conditions	Fig. 1 from Hermans et al., 2010
Ab10-prox1		corpuscles of Stannius (not) lymphangiogenic sprout muscle pioneer	chemical treatment by environment: SL-327	Fig. 4  from Shin et al., 2016
Ab1-rprm		olfactory system	standard conditions	Fig. 3  from Stanic et al., 2018
znp-1		motor neuron axon	standard conditions	Fig. 6  from Kwon et al., 2013
Ab1-tjp1		angiogenic sprout tight junction blood vessel endothelial cell bicellular tight junction cranial blood vessel dorsal aorta bicellular tight junction endothelial cell cell junction intersegmental vessel cell junction notochord somite bicellular tight junction ventricular system	standard conditions	13 figures from 7 publications
Ab11-smad		Meckel's cartilage chondrocyte palatoquadrate cartilage chondrocyte	standard conditions	Fig. 4 from Flanagan-Steet et al., 2016
zn-5		retinal ganglion cell layer	chemical treatment: glucose	Fig. 4 from Alvarez et al., 2010
Ab2-cspg4		chondrocyte	chemical treatment by environment: SB 505124	Fig. 6  from Flanagan-Steet et al., 2018
Ab1-nrp1		regenerating tissue ventricular endocardium	cold damage: cardiac ventricle	Fig. 2 from Lowe et al., 2019
Ab1-smad		Meckel's cartilage palatoquadrate cartilage chondrocyte pharyngeal arch	standard conditions	Fig. 5  from Li et al., 2018 Fig. 4,  Fig. 5 from Flanagan-Steet et al., 2016
Ab2-smad2/3		ceratohyal cartilage chondrocyte Meckel's cartilage chondrocyte	standard conditions	Fig. 4 from Flanagan-Steet et al., 2016
Ab1-tmem184a		post-vent vasculature endothelial cell	amputation: caudal fin	Fig. 1  from Farwell et al., 2017
Ab1-cdh5		blood vessel endothelial cell cell-cell junction	chemical treatment: pharmaceutical	Fig. 3  from De Smet et al., 2014
Ab1-esama		endothelial cell cell junction intersegmental vessel cell junction	control	Fig. 5 from Sauteur et al., 2014
zpr-3		retinal rod cell	chemical treatment: glucose	Fig. 4 from Alvarez et al., 2010
Ab4-h3		pharyngeal arch	control	Fig. 5  from Kara et al., 2017
Ab-T4		thyroid follicle	control	Fig. 7,  Fig. 8 from Opitz et al., 2011
Ab1-tmem184a		post-vent vasculature endothelial cell	standard conditions	Fig. 1  from Farwell et al., 2017
Ab1-casp3		(not) axial vasculature (not) trunk vasculature	control	Fig. 6 from Craig et al., 2015
Ab1-lama1		blood vessel endothelial cell basement membrane dorsal aorta blood vessel endothelial cell optic furrow basement membrane	standard conditions	Fig. 4  from James et al., 2016 Fig. 3 from Hultin et al., 2014
Ab1-lama2		somite border	standard conditions	text only from Zygmunt et al., 2011
Ab1-tjp1		endothelial cell cell-cell junction intersegmental vessel cell junction	chemical treatment by gavage: bexarotene, chemical treatment by injection: doxorubicin	Fig. 6 from Ma et al., 2020 Fig. 5 from Sauteur et al., 2014
Ab1-dag1		somite myofibril	standard conditions	Fig. 3 from Wood et al., 2011
zpr-1		retinal cone cell	control	Fig. 4,  Fig. 5 from Alvarez et al., 2010
Ab1-pan-Cadherin		mouth	standard conditions	Fig. S3 from Eberhart et al., 2008
zpr-1		retinal cone cell	chemical treatment: glucose	Fig. 4,  Fig. 5 from Alvarez et al., 2010
zn-5		pharyngeal pouch retinal ganglion cell layer	standard conditions	Fig. S5  from Ning et al., 2013 Fig. 4 from Alvarez et al., 2010 Fig. 2  from Schwend et al., 2009
Ab1-col2a		ceratohyal cartilage cranial cartilage chondrocyte ethmoid cartilage neurocranial trabecula chondrocyte palatoquadrate cartilage pharyngeal arch	standard conditions	Fig. 3 ,  Fig. 5 ,  Fig. 7  from Yang et al., 2022 Fig. 4  from Li et al., 2018 Fig. 2 ,  Fig. 4  from Ning et al., 2013 Fig. 4 from Flanagan-Steet et al., 2009
Ab2-lcp1		macrophage neutrophil	control	Fig. 1 from Varela et al., 2014
zpr-3		retinal rod cell	control	Fig. 4 from Alvarez et al., 2010
Ab1-esama		endothelial cell cell junction intersegmental vessel cell junction	chemical treatment: pharmaceutical	Fig. 5 from Sauteur et al., 2014
Ab9-mapk		dorsal aorta endothelial cell intersegmental vessel motor neuron posterior cardinal vein vascular sprouts	standard conditions	Fig. 4  from Kärpanen et al., 2017 Fig. 1 ,  Fig. 2 ,  Fig. 7  from Shin et al., 2016 Fig. 4  from Shin et al., 2016 Fig. 4  from Le Guen et al., 2014 Fig. 8 from Yu et al., 2010
Ab1-cdh5	cdh5	blood vessel endothelial cell cell junction dorsal aorta bicellular tight junction intersegmental vessel cell junction pronephros	standard conditions	Fig. 3  from De Smet et al., 2014 Fig. S1 from Sauteur et al., 2014 Fig. 8 from Hayashi et al., 2013 Fig. 6  from Carra et al., 2012 Fig. 1  from Herwig et al., 2011 Fig. 7 ,  Fig. 8  from Wang et al., 2010 Fig. 3 ,  Fig. 4  from Blum et al., 2008
Ab1-cyp1a	cyp1a	endocardium epidermis liver myocardium cell vascular endothelium	chemical treatment: pharmaceutical	Fig. 2,  Fig. 3 from Incardona et al., 2011
Ab3-GFP	EGFP	endothelial cell subintestinal vein	standard conditions	Fig. 3 from Hogan et al., 2008
Ab1-GFP	GFP	endocardium vasculature	chemical treatment: pharmaceutical	Fig. 2,  Fig. 3 from Incardona et al., 2011
Ab1-hmgb1a	hmgb1a	blood vessel	control	Fig. 4 from Fang et al., 2014
Ab1-hmgb1a		blood vessel	physical alteration: spinal cord	Fig. 4 from Fang et al., 2014
Ab1-meox1	meox1	dorsal aorta somite	standard conditions	Fig. 2,  Fig. S3 from Nguyen et al., 2014
Ab1-mlc1	mlc1	astrocyte Muller cell astrocyte end-foot	standard conditions	Fig. 4 from Sirisi et al., 2014
Ab1-nostrin	nostrin	whole organism	control	Fig. 1 from Kovacevic et al., 2012
Ab1-ntn4	ntn4	blood vessel endothelial cell	control	Fig. 1 from Lambert et al., 2012
Ab1-pdgfrb	pdgfrb	whole organism	standard conditions	Fig. 2  from Kok et al., 2015
Ab1-podxl2	podxl2	angiogenic sprout apical plasma membrane blood vessel endothelial cell apical plasma membrane dorsal aorta blood vessel endothelial cell intersegmental vessel	standard conditions	Fig. 6  from Sauteur et al., 2017 Fig. 3 from Hultin et al., 2014 Fig. 8 from Hayashi et al., 2013
Ab1-tg	tg	thyroid follicle	control	Fig. 7 from Opitz et al., 2011
Ab1-tgfbr3	tgfbr3	notochord somite spinal cord anatomical region trunk vasculature anatomical region	control	Fig. 3 ,  Fig. 5  from Kamaid et al., 2015
Ab2-tmem184a	tmem184a	post-vent vasculature endothelial cell	standard conditions	Fig. 1  from Farwell et al., 2017
Ab2-tmem184a		post-vent vasculature endothelial cell	amputation: caudal fin	Fig. 1  from Farwell et al., 2017
Ab1-tp53	tp53	(not) vascular endothelium	control	Fig. 4  from Espín et al., 2013

Reporter gene expression

Expressed Gene	Structure	Conditions	Figures
EGFP	angioblastic mesenchymal cell anterior cerebral vein anterior lateral plate mesoderm aortic arch 1 atrial endocardium cell atrioventricular canal endocardium cell axial blood vessel axial vasculature ball vasculature basihyal cartilage basilar artery blood cell blood vasculature blood vessel blood vessel endothelial cell blood vessel endothelium brain brain vasculature bulbus arteriosus endothelial cell capillary endothelial cell cardinal system caudal artery caudal fin vasculature caudal vein caudal vein plexus central artery ceratobranchial cartilage ceratohyal cartilage chondrocyte cerebellar central artery chondrocranium cartilage cranial neural crest cell chondrocyte common cardinal vein cranial blood vessel endothelial cell cranial cartilage cranial neural crest cell cranial vasculature dorsal aorta dorsal longitudinal anastomotic vessel dorsal longitudinal vein endocardial cushion endocardium cell endothelial cell endothelial tip cell eye gill gut head head mesenchyme heart heart tube heart vasculature hindbrain vasculature horizontal myoseptum endothelial cell hyaloid vessel integument intersegmental artery intersegmental vein intersegmental vessel intestine vasculature kidney vasculature lateral dorsal aorta lateral facial lymph vessel lateral plate mesoderm embryonic blood vessel endothelial progenitor cell lateral zone of dorsal telencephalon blood cell lymph vasculature lymphangioblast cord lymphangiogenic sprout mandibular arch skeleton Meckel's cartilage chondrocyte mesencephalic vein metencephalic artery mid cerebral vein mouth muscle neural crest neural crest cell neurocranial trabecula chondrocyte ocular blood vessel optic artery optic cup palatoquadrate cartilage chondrocyte parachordal vessel pectoral fin blood vessel blood vessel endothelium pectoral fin bud pharyngeal arch pharyngeal arch 1 pharyngeal arch 2 pharyngeal arch 3 pharyngeal arch 3-7 pharyngeal arch 4 pharyngeal arch 5 pharyngeal arch 6 pharyngeal arch 7 pharyngeal arch cartilage post-vent vasculature posterior cardinal vein posterior caudal vein blood vessel endothelium posterior cerebral vein posterior communicating artery posterior lateral mesoderm posterior lateral plate mesoderm primordial hindbrain channel primordial midbrain channel pronephric glomerular capillary retina capillary Rohon-Beard neuron subintestinal vein subintestinal venous plexus blood vessel endothelium testis endothelial cell thoracic duct trunk vasculature unspecified vascular cord vascular endothelium vascular lymphangioblast vascular sprouts vasculature ventral aorta ventral wall of dorsal aorta ventricular endocardium cell whole organism	standard conditions	414 figures from 223 publications
	atrial endocardium cell atrioventricular canal endocardium cell blood vasculature blood vessel caudal artery caudal vein caudal vein plexus ceratohyal cartilage dorsal aorta dorsal longitudinal anastomotic vessel endocardial cushion endocardium cell endothelial cell hyaloid vessel intersegmental vessel intestine vasculature lateral zone of dorsal telencephalon blood cell ocular blood vessel palatoquadrate cartilage pectoral fin pharyngeal arch posterior cardinal vein retina ocular blood vessel subintestinal vein trunk vasculature vascular lymphangioblast vasculature ventral aorta ventricular endocardium cell	chemical treatment: pharmaceutical	52 figures from 34 publications
	blood vasculature blood vessel brain vasculature (not) cardiac ventricle regenerating tissue endothelial cell heart endothelial cell heart vasculature intersegmental vessel macrophage optic artery vascular endothelium regenerating fin regenerating tissue vasculature retina capillary subintestinal vein vascular endothelium vasculature whole organism neoplasm	physical alteration: anatomical structure	73 figures from 46 publications
GFP	basilar artery central artery cranial vasculature dorsal aorta endothelial cell intersegmental vessel mid cerebral vein posterior cardinal vein primordial hindbrain channel segmental plate vasculature	standard conditions	Fig. 1 ,  Fig. 2 ,  Fig. 7 ,  Fig. S1  from Shin et al., 2016 Fig. 5 from Tonon et al., 2016 Fig. 2  from Zaucker et al., 2013 Fig. 4  from Murphy et al., 2010
	endocardium endothelial cell vasculature	chemical treatment: semaxanib	Fig. 7  from Shin et al., 2016 Fig. 2,  Fig. 3 from Incardona et al., 2011 Fig. 3 ,  Fig. 4 ,  Fig. S3  from Murphy et al., 2010
	endothelial cell leukocyte vasculature	bacterial treatment by injection: Escherichia coli	Fig. 7 from Itou et al., 2017 Fig. 2  from Barber et al., 2016 Fig. 2  from Mercatali et al., 2016 Fig. 5 from Tonon et al., 2016