Gene

scnm1

ID
ZDB-GENE-030131-415
Name
sodium channel modifier 1
Symbol
scnm1 Nomenclature History
Previous Names
  • fb30c06
  • wu:fb30c06
  • zgc:123015
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to have metal ion binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to localize to nuclear speck. Orthologous to human SCNM1 (sodium channel modifier 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With scnm1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
orofaciodigital syndrome XIX Alliance Orofaciodigital syndrome XIX 620107
Associated With scnm1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR031622 Sodium channel modifier 1, zinc-finger
Domain IPR031625 Sodium channel modifier 1, acidic C-terminal domain
Family IPR033570 Sodium channel modifier 1
Domain Details Per Protein
Protein Length Sodium channel modifier 1 Sodium channel modifier 1, acidic C-terminal domain Sodium channel modifier 1, zinc-finger
UniProtKB:Q2YDS5 249
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA scnm1-201 (1) Ensembl 1,342 nt
mRNA scnm1-202 (1) Ensembl 1,652 nt
ncRNA scnm1-003 (1) Ensembl 224 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations