ZFIN Sequences for Gene: nrxn3a

ZFIN ID: ZDB-GENE-070206-9

ZFIN ID: ZDB-GENE-070206-9

SEQUENCE INFORMATION

Gene Name:	neurexin 3a
Gene Symbol:	nrxn3a

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001430850 (1)	6677 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467198 (1)	6422 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467201 (1)	6395 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927387 (1)	6386 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927375 (1)	6251 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214421 (1)	6239 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467192 (1)	6215 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927376 (1)	6200 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467194 (1)	6197 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927377 (1)	6188 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927378 (1)	6188 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927379 (1)	6185 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467195 (1)	6173 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927380 (1)	6173 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467196 (1)	6170 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927381 (1)	6161 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927384 (1)	6152 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467197 (1)	6146 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927382 (1)	6134 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927386 (1)	5552 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467202 (1)	5540 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927388 (1)	5501 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214428 (1)	5210 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927385 (1)	5189 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_021467203 (1)	3362 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073927383 (1)	2888 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_068214431 (1)	2425 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XR_002455904 (1)	6675 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01028547 (1)	10375 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:DQ641433 (1)	7351 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:DQ641432 (1)	6772 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:DQ641434 (1)	3621 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC154342 (1)	2136 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CK682234 (1)	790 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW281732 (1)	341 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX571723 (2)	201159 nt	Blast at MegaBLAST
	GenBank:CR381576 (2)	185749 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR536614 (2)	155951 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR936419 (2)	102135 nt	Select Tool MegaBLAST Ensembl
	GenBank:FO818654 (1)	38021 nt	Select Tool MegaBLAST Ensembl
	GenBank:FO904839 (1)	36120 nt	Select Tool MegaBLAST Ensembl
	GenBank:CT573309 (2)	32599 nt	Select Tool MegaBLAST Ensembl
	GenBank:JBMGRA010000017 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl
Polypeptide	UniProtKB:A1XQX8 (1)	1697 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32TAR3 (1)	1695 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PKT1 (1)	1692 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB13AAE4 (1)	1690 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P070 (1)	1687 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P8Z3 (1)	1686 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T3Q3 (1)	1686 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PEA6 (1)	1681 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PNT7 (1)	1673 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PKT6 (1)	1672 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T3Q6 (1)	1669 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P072 (1)	1664 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T6G7 (1)	1591 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T9B9 (1)	1588 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T643 (1)	1569 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32TB23 (1)	1566 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T508 (1)	1487 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T5M1 (1)	1484 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P8Z6 (1)	1473 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PEB2 (1)	1470 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T7F7 (1)	1465 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9PKU0 (1)	1464 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P074 (1)	1462 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A1XQY0 (1)	672 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M9P901 (1)	464 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AB32T7L8 (1)	461 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001417779 (1)	1690 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783476 (1)	1699 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_068070522 (1)	1695 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322867 (1)	1687 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783477 (1)	1682 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322869 (1)	1681 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783478 (1)	1678 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783479 (1)	1678 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783480 (1)	1677 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322870 (1)	1673 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783481 (1)	1673 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322871 (1)	1672 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783482 (1)	1669 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783485 (1)	1666 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322872 (1)	1664 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783483 (1)	1660 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_068070529 (1)	1569 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783486 (1)	1562 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322873 (1)	1473 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783487 (1)	1466 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322876 (1)	1464 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322877 (1)	1462 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783488 (1)	1461 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783489 (1)	1449 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_021322878 (1)	464 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_068070532 (1)	461 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073783484 (1)	405 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:A1XQX8 (1)	1697 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:ABG25169 (1)	1697 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:ABG25170 (1)	1425 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:A1XQY0 (1)	672 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:ABG25171 (1)	672 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI54343 (1)	261 aa	Select Tool ZFIN BLAST NCBI BLAST

nrxn3a CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] CH211-154E6 (1)	Genomic	GenBank:CR536614	155951	Select Tool MegaBLAST Ensembl
[BAC] DKEY-109B24 (1)	Genomic	GenBank:CR936419	102135	Select Tool MegaBLAST Ensembl
[BAC] DKEY-153P6 (1)	Genomic	GenBank:CT573309	32599	Select Tool MegaBLAST Ensembl
[BAC] DKEY-245F17 (1)	Genomic	GenBank:CR381576	185749	Select Tool MegaBLAST Ensembl
[BAC] DKEYP-51D5 (1)	Genomic	GenBank:BX571723	201159	Blast at MegaBLAST

nrxn3a ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[CDNA] MGC:174586 (1)	RNA	GenBank:BC154342	2136	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Polypeptide	GenPept:AAI54343	261	Select Tool ZFIN BLAST NCBI BLAST
[EST] fj54c11 (1)	RNA	GenBank:AW281732	341	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] IMAGE:7144250 (1)	RNA	GenBank:CK682234	790	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT