ZFIN ID: ZDB-GENE-030605-1

ZFIN ID: ZDB-GENE-030605-1

Mapping Details

Gene Name:	SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4a
Symbol:	smarca4a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	18,030,355 - 18,066,437	GRCz12tu
NCBI Map Viewer	3	18,030,355 - 18,066,437	GRCz12tu
Ensembl	3	19,245,804 - 19,281,878	GRCz11
NCBI Map Viewer	3	19,245,806 - 19,281,878	GRCz11
UCSC	3	-	GRCz11
Vega	3	19,096,064 - 19,132,138	GRCv10

Mapped Clones containing smarca4a
CH211-224D23	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
a8	3	19,256,681	GRCz11	DIRECT		Gregg et al., 2003
hzu13	3	19,249,129 - 19,249,135	GRCz11	DIRECT		Tu et al., 2020
sa12514	3	18,047,000	GRCz12tu	DIRECT		Sealy et al., 2025
	3	19,262,441	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	19,112,701	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	19,084,339	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa19981	3	18,052,528	GRCz12tu	DIRECT		Sealy et al., 2025
	3	19,267,969	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	19,118,229	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	19,089,867	Zv9	DIRECT		Busch-Nentwich et al., 2013
a8	3		GRCz11	GENERAL_LOAD	load data [singleton]
s481	3		GRCz11	GENERAL_LOAD	load data [singleton]
a8	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	3		GRCz11	OTHER_MAPPING	linkagesDirectMem2
a50	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
hzu13	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
s481	3		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	3		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa12514	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa19981	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	38.9 cM	smarca4	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature s481 is an allele of smarca4a

Marker	Type	Chr	Distance	Publication / Person	Comments
z59420	SSLP	3		Takeuchi et al., 2011	Taeuchi et al. (2011, Nat. Commun. 2:187) mapped s481 to Chr.3 using SSLP ...
z5623	SSLP	3		Takeuchi et al., 2011	Taeuchi et al. (2011, Nat. Commun. 2:187) mapped s481 to Chr.3 using SSLP ...

Genomic Feature a8 is an allele of smarca4a

Marker	Type	Chr	Distance	Publication / Person	Comments
z1140	SSLP	3		Gregg et al., 2003
z5623	SSLP	3		Gregg et al., 2003

Genomic Feature a8 is an allele of smarca4a

Chr 3

Gregg et al., 2003

Genomic Feature s481 is an allele of smarca4a

Chr 3

Takeuchi et al., 2011

Taeuchi et al. (2011, Nat. Commun. 2:187) mapped s481 to Chr.3 using SSLP markers.