ZFIN ID: ZDB-GENE-040426-1146

ZFIN ID: ZDB-GENE-040426-1146

Mapping Details

Gene Name:	intraflagellar transport 54
Symbol:	ift54

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	9	47,413,142 - 47,475,688	GRCz12tu
NCBI Map Viewer	9	47,413,142 - 47,475,688	GRCz12tu
Ensembl	9	45,605,410 - 45,667,487	GRCz11
NCBI Map Viewer	9	45,605,398 - 45,667,883	GRCz11
UCSC	9	-	GRCz11
Vega	9	45,804,931 - 45,867,008	GRCv10

Mapped Clones containing ift54
CH211-268B13	Chr: 9 Details
DKEY-34F9	Chr: 9 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
m649	9	45,605,589	GRCz11	DIRECT	ZFIN Curated Data
sa17414	9	47,437,873	GRCz12tu	DIRECT	Sealy et al., 2025
	9	45,630,122	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	45,829,643	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	46,698,363	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa31748	9	47,431,043	GRCz12tu	DIRECT	Sealy et al., 2025
	9	45,623,294	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	45,822,815	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	46,691,535	Zv9	DIRECT	Busch-Nentwich et al., 2013
tp49d	9	45,623,339	GRCz11	DIRECT	ZFIN Curated Data
la029613Tg	9	46,721,675 - 46,721,685	Zv9	ZFIN_Zv9
	9		GRCz11	OTHER_MAPPING	ZFIN Curated Data
m649	9		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tp49d	9		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS: No data available

Genomic Feature tp49d is an allele of ift54

Chr	Location	Mapped As	Panel	Mapped By	Scoring
9	67.3 cM	tp49d	Boston MGH Cross (MGH)	Geisler, Robert	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature tp49d is an allele of ift54

Marker	Type	Chr	Distance	Publication / Person	Comments
z20031	SSLP	9		Bahadori et al., 2003	Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of eli to LG 9. At the time of mapping eli was mapped 67.4 cM from the top of LG 9 between the markers z20031 and z4577.
z4577	SSLP	9		Bahadori et al., 2003	Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of eli to LG 9. At the time of mapping eli was mapped 67.4 cM from the top of LG 9 between the markers z20031 and z4577.

Genomic Feature tp49d is an allele of ift54

Chr 9

Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of ...

Genomic Feature m649 is an allele of ift54