ZFIN ID: ZDB-GENE-990415-131

Mapping Details

Gene Name: huntingtin
Symbol: htt
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 44,384,182 - 44,464,648 GRCz12tu
NCBI Map Viewer 1 44,384,182 - 44,464,648 GRCz12tu
Ensembl 1 41,293,964 - 41,374,117 GRCz11
NCBI Map Viewer 1 41,293,962 - 41,374,420 GRCz11
UCSC 1 - GRCz11
Vega 1 40,591,177 - 40,671,330 GRCv10
Vega 1 40,615,454 - 40,628,985 GRCv10
Mapped Clones containing htt
CH211-89O9 Chr: 1 Details
DKEY-180B4 Chr: 1 Details
DKEY-21K13 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa12352 1 44,385,723 GRCz12tu DIRECT Sealy et al., 2025
1 41,295,503 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,592,716 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,676,475 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15014 1 44,450,125 GRCz12tu DIRECT Sealy et al., 2025
1 41,359,883 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,657,096 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,740,855 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19544 1 44,395,290 GRCz12tu DIRECT Sealy et al., 2025
1 41,305,071 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,602,284 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,686,043 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19545 1 44,442,911 GRCz12tu DIRECT Sealy et al., 2025
1 41,352,669 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,649,882 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,733,641 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38282 1 44,406,462 GRCz12tu DIRECT Sealy et al., 2025
1 41,316,245 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,613,458 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,697,217 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39657 1 44,388,561 GRCz12tu DIRECT Sealy et al., 2025
1 41,298,341 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,595,554 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,679,313 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39658 1 44,430,783 GRCz12tu DIRECT Sealy et al., 2025
1 41,340,566 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,637,779 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,721,538 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39659 1 44,445,419 GRCz12tu DIRECT Sealy et al., 2025
1 41,355,177 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,652,390 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,736,149 Zv9 DIRECT Busch-Nentwich et al., 2013
sa45079 1 44,403,091 GRCz12tu DIRECT Sealy et al., 2025
1 41,312,872 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 40,610,085 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 41,693,844 Zv9 DIRECT Busch-Nentwich et al., 2013
zf3263 1 41,362,949 - 41,374,113 GRCz11 DIRECT Sidik et al., 2019
sa12352 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa15014 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa19544 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19545 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa38282 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa39657 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa39658 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa39659 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa45079 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
zf3263 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
zko778a 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
zko778b 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zko779a 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zko779b 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 4648.0 cR hd Goodfellow T51 (T51) Geisler, Robert Data
1 63.9 cM hd Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature zko779b is an allele of htt
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