ZFIN ID: ZDB-GENE-990415-200

Mapping Details

Gene Name: paired box 6a
Symbol: pax6a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 25 15,971,253 - 16,053,519 GRCz12tu
NCBI Map Viewer 25 15,971,253 - 16,053,519 GRCz12tu
Ensembl 25 15,029,041 - 15,049,781 GRCz11
NCBI Map Viewer 25 15,029,041 - 15,049,748 GRCz11
UCSC 25 - GRCz11
Vega 25 14,932,641 - 14,953,381 GRCv10
Mapped Clones containing pax6a
DKEY-82I7 Chr: 25 Details
DKEYP-46C10 Chr: 25 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
ka709 25 15,031,604 - 15,034,614 GRCz11 DIRECT Takamiya et al., 2020
la023151Tg 25 15,402,408 - 15,402,418 Zv9 ZFIN_Zv9 BurgessLin
ka709 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
kut5Tg 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
kut6Tg 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
kut7Tg 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
la023151Tg 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
25 1628.0 cR pax6a Goodfellow T51 (T51) Geisler, Robert Data
25 37.63 cM pax6a Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
smb825Et Feature 25 Kikuta et al., 2007 Et(CLG-YFP)smb825 was mapped to 116 kb downstream of pax6a on LG25.

OTHER MAPPING INFORMATION
Chr 25 Kikuta et al., 2007 Et(CLG-YFP)smb825 was mapped to 116 kb downstream of pax6a on LG25.
Markers Encoded by pax6a
fc20e07 Chr: 25 Details
Genomic Feature kut6Tg is an allele of pax6a
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