ZFIN ID: ZDB-GENE-000607-13

Mapping Details

Gene Name:	SRY-box transcription factor 5
Symbol:	sox5

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	4	17,569,725 - 17,804,559	GRCz12tu
NCBI Map Viewer	4	17,569,725 - 17,804,559	GRCz12tu
Ensembl	4	16,982,249 - 17,055,782	GRCz11
NCBI Map Viewer	4	16,981,414 - 17,216,212	GRCz11
UCSC	4	-	GRCz11
Vega	4	16,993,273 - 17,066,806	GRCv10

Mapped Clones containing sox5
DKEY-215A8	Chr: 4 Details
CH211-47D3	Chr: 4 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
nju904	4	16,995,490 - 16,995,505	GRCz11	DIRECT	Zebrafish Nomenclature Committee
sa18782	4	17,580,051	GRCz12tu	DIRECT	Sealy et al., 2025
	4	16,991,740	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	4	17,002,764	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	4	16,059,924	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa33439	4	17,576,361	GRCz12tu	DIRECT	Sealy et al., 2025
	4	16,988,050	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	4	16,999,074	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	4	16,056,234	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa33440	4	17,605,738	GRCz12tu	DIRECT	Sealy et al., 2025
	4	17,017,427	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	4	17,028,451	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	4	16,085,611	Zv9	DIRECT	Busch-Nentwich et al., 2013
la011378Tg	4	16,085,508 - 16,085,518	Zv9	ZFIN_Zv9
la015343Tg	4	16,092,306 - 16,092,316	Zv9	ZFIN_Zv9
la015344Tg	4	16,102,109 - 16,102,119	Zv9	ZFIN_Zv9
la015345Tg	4	16,120,582 - 16,120,592	Zv9	ZFIN_Zv9
la024453Tg	4	16,102,970 - 16,102,980	Zv9	ZFIN_Zv9
la024454Tg	4	16,115,927 - 16,115,937	Zv9	ZFIN_Zv9
la028982Tg	4	16,095,947 - 16,095,957	Zv9	ZFIN_Zv9
la028983Tg	4	16,117,428 - 16,117,438	Zv9	ZFIN_Zv9
i300	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
i301	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la011378Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la015343Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la015344Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la015345Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la024453Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la024454Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028982Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028983Tg	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
nju904	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data
nub13	4		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
4	211.74 cR	IBD5067	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available

Genomic Feature nju904 is an allele of sox5