Mapping Details

Genome Browser Chr Position Assembly ZFIN 21 38,382,223 - 38,502,841 GRCz12tu NCBI Map Viewer 21 38,382,223 - 38,502,841 GRCz12tu Ensembl 21 34,686,764 - 34,793,909 GRCz11 NCBI Map Viewer 21 34,686,796 - 34,793,908 GRCz11 UCSC 21 - GRCz11 Vega 21 34,652,274 - 34,759,419 GRCv10

Mapped Clones containing chm
CH211-112H5	Chr: 21 Details
CH211-182D6	Chr: 21 Details
CH211-268H1	Chr: 21 Details

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
z4425	SSLP	21	7.2 cM	Starr et al., 2004	Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype  ... Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype chm identified in the ru848 line to LG 21. The phenotype cosegregated with z4425. Further characterization with additional markers revealed a second marker z10960 that was 7.2 cM distant on the other side of the mutation. Genotyping of 2000 mutant larvae revealed that there were only three recombinants between z10960 and chm while there there were 225 recombinants between z4425 and the mutant phenotype. Analyses of BACs containing z10960 revealed the presence of two genes dacha and chm in the region. Subsequent experiments revealed the presence of a nonsense mutation in the chm gene to be responsible for the mutant phenotype.
z10960	SSLP	21		Starr et al., 2004	Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype  ... Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype chm identified in the ru848 line to LG 21. The phenotype cosegregated with z4425. Further characterization with additional markers revealed a second marker z10960 that was 7.2 cM distant on the other side of the mutation. Genotyping of 2000 mutant larvae revealed that there were only three recombinants between z10960 and chm while there there were 225 recombinants between z4425 and the mutant phenotype. Analyses of BACs containing z10960 revealed the presence of two genes dacha and chm in the region. Subsequent experiments revealed the presence of a nonsense mutation in the chm gene to be responsible for the mutant phenotype.
dacha	GENE	21		Starr et al., 2004	Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype  ... Starr CJ et al. (Proc. Natl. Acad. Sci USA 2004) mapped the mutant phenotype chm identified in the ru848 line to LG 21. The phenotype cosegregated with z4425. Further characterization with additional markers revealed a second marker z10960 that was 7.2 cM distant on the other side of the mutation. Genotyping of 2000 mutant larvae revealed that there were only three recombinants between z10960 and chm while there there were 225 recombinants between z4425 and the mutant phenotype. Analyses of BACs containing z10960 revealed the presence of two genes dacha and chm in the region. Subsequent experiments revealed the presence of a nonsense mutation in the chm gene to be responsible for the mutant phenotype.

OTHER MAPPING INFORMATION: No data available