ZFIN ID: ZDB-GENE-990630-12

Mapping Details

Gene Name: contactin 2
Symbol: cntn2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 11 25,943,723 - 26,036,566 GRCz12tu
NCBI Map Viewer 11 25,943,723 - 26,036,566 GRCz12tu
Ensembl 11 23,933,016 - 23,979,614 GRCz11
NCBI Map Viewer 11 23,933,017 - 23,988,258 GRCz11
NCBI Map Viewer 11 23,933,017 - 23,988,258 GRCz11
UCSC 11 - GRCz11
Vega 11 23,695,159 - 23,741,757 GRCv10
Mapped Clones containing cntn2
BUSM1-37K09 Chr: 11 Details
CH73-73I11 Chr: 11 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa9412 11 25,977,601 GRCz12tu DIRECT Sealy et al., 2025
11 23,965,884 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,728,027 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,888,728 Zv9 DIRECT Busch-Nentwich et al., 2013
sa12173 11 25,989,394 GRCz12tu DIRECT Sealy et al., 2025
11 23,977,665 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,739,808 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,900,509 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19006 11 25,977,601 GRCz12tu DIRECT Sealy et al., 2025
11 23,965,884 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,728,027 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,888,728 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21903 11 25,987,896 GRCz12tu DIRECT Sealy et al., 2025
11 23,976,192 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,738,335 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,899,036 Zv9 DIRECT Busch-Nentwich et al., 2013
sa35078 11 25,978,574 GRCz12tu DIRECT Sealy et al., 2025
11 23,966,856 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,728,999 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,889,700 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41829 11 25,975,396 GRCz12tu DIRECT Sealy et al., 2025
11 23,963,722 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,725,865 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,886,566 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41830 11 25,978,300 GRCz12tu DIRECT Sealy et al., 2025
11 23,966,582 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,728,725 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,889,426 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41831 11 25,983,969 GRCz12tu DIRECT Sealy et al., 2025
11 23,972,269 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 23,734,412 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 24,895,113 Zv9 DIRECT Busch-Nentwich et al., 2013
zou20 11 23,965,902 - 23,965,906 GRCz11 DIRECT Gurung et al., 2018
zou22 11 23,965,895 - 23,965,905 GRCz11 DIRECT Gurung et al., 2018
nub12 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9412 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa12173 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19006 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa21903 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa35078 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa41829 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa41830 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa41831 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zou20 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
zou22 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
11 45.5 cM cntn2 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature sa41830 is an allele of cntn2
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