ZFIN ID: ZDB-GENE-000329-17

ZFIN ID: ZDB-GENE-000329-17

Mapping Details

Gene Name:	homeobox C12b
Symbol:	hoxc12b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	11	2,200,445 - 2,201,558	GRCz12tu
NCBI Map Viewer	11	2,200,445 - 2,201,558	GRCz12tu
Ensembl	11	2,172,335 - 2,175,033	GRCz11
NCBI Map Viewer	11	2,172,335 - 2,173,459	GRCz11
UCSC	11	-	GRCz11
Vega	11	2,132,276 - 2,133,537	GRCv10

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa17786	11	2,200,910	GRCz12tu	DIRECT		Sealy et al., 2025
	11	2,172,800	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	2,132,936	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	2,180,483	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa21829	11	2,200,583	GRCz12tu	DIRECT		Sealy et al., 2025
	11	2,172,473	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	2,133,263	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	2,180,810	Zv9	DIRECT		Busch-Nentwich et al., 2013
sud124c	11	2,172,462 - 2,172,469	GRCz11	DIRECT		Yamada et al., 2021
sud134a	11	2,172,463	GRCz11	DIRECT		Adachi et al., 2024
sud146	11	2,172,462 - 2,172,463	GRCz11	DIRECT		Adachi et al., 2024
sa17786	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa21829	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sud124c	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sud134a	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sud146	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
11	2.6 cM	hoxc12b	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
hoxc6b	GENE	11	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc11b	GENE	11	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc13b	GENE	11	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.

Chr 11

Amores et al., 1998

Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, ...

Genomic Feature sa21829 is an allele of hoxc12b