ZFIN ID: ZDB-GENE-021226-3

Mapping Details

Gene Name: laminin, gamma 1
Symbol: lamc1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 2 38,856,909 - 38,955,449 GRCz12tu
NCBI Map Viewer 2 38,856,909 - 38,955,449 GRCz12tu
Ensembl 2 35,880,600 - 35,979,178 GRCz11
NCBI Map Viewer 2 35,880,600 - 35,979,095 GRCz11
UCSC 2 - GRCz11
Vega 2 35,898,143 - 35,996,721 GRCv10
Mapped Clones containing lamc1
CH211-194I4 Chr: 2 Details
DKEY-161L11 Chr: 2 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
hi1193Tg 2 35,924,004 - 35,924,005 GRCz11 DIRECT ZFIN Curated Data
hi2557Tg 2 35,880,992 - 35,880,993 GRCz11 DIRECT ZFIN Curated Data
hi3890Tg 2 35,900,512 - 35,900,513 GRCz11 DIRECT ZFIN Curated Data
hi4131Tg 2 35,933,682 - 35,933,683 GRCz11 DIRECT ZFIN Curated Data
m86 2 35,939,841 GRCz11 DIRECT Parsons et al., 2002
m466 2 35,881,007 GRCz11 DIRECT Parsons et al., 2002
sa379 2 38,930,810 GRCz12tu DIRECT Sealy et al., 2025
2 35,954,454 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 35,971,997 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 35,675,287 Zv9 DIRECT Busch-Nentwich et al., 2013
sa9866 2 38,947,651 GRCz12tu DIRECT Sealy et al., 2025
2 35,971,297 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 35,988,840 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 35,692,130 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19814 2 38,932,279 GRCz12tu DIRECT Sealy et al., 2025
2 35,955,923 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 35,973,466 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 35,676,756 Zv9 DIRECT Busch-Nentwich et al., 2013
sa30600 2 38,944,342 GRCz12tu DIRECT Sealy et al., 2025
2 35,967,988 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 35,985,531 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 35,688,821 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39876 2 38,942,306 GRCz12tu DIRECT Sealy et al., 2025
2 35,965,952 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 35,983,495 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 35,686,785 Zv9 DIRECT Busch-Nentwich et al., 2013
la023638Tg 2 35,602,191 - 35,602,201 Zv9 ZFIN_Zv9 BurgessLin
la023639Tg 2 35,648,924 - 35,648,934 Zv9 ZFIN_Zv9 BurgessLin
la028800Tg 2 35,646,031 - 35,646,041 Zv9 ZFIN_Zv9 BurgessLin
la028801Tg 2 35,648,212 - 35,648,222 Zv9 ZFIN_Zv9 BurgessLin
cz61 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
hi1193Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
hi2557Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
hi3890Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
hi4131Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
la023638Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la023639Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la028800Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la028801Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
lamc1_unspecified 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m86 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m91 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m99 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m152 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m253 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m388 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m466 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m515 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m516 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m707 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa379 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa9866 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa19814 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa30600 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa39876 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
te223 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
te333 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tf215b 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ti263a 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING directMappedMarker
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING paneledMarkersDirect
ti272a 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm89 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
to216a 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tp16 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ts33a 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
wi390Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11023 SSLP 2 1.6 cM Parsons et al., 2002 Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.
z7632 SSLP 2 1.8 cM Parsons et al., 2002 Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.
elavl1a GENE 2 Parsons et al., 2002 Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.

OTHER MAPPING INFORMATION
Genomic Feature ti263a is an allele of lamc1
Chr Location Mapped As Panel Mapped By Scoring
2 48.8 cM ti263a Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature sa9866 is an allele of lamc1
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