ZFIN ID: ZDB-GENE-990715-6

Mapping Details

Gene Name:	SRY-box transcription factor 21a
Symbol:	sox21a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	6	8,348,594 - 8,349,664	GRCz12tu
NCBI Map Viewer	6	8,348,594 - 8,349,664	GRCz12tu
Ensembl	6	7,414,215 - 7,415,343	GRCz11
NCBI Map Viewer	6	7,414,273 - 7,415,343	GRCz11
UCSC	6	-	GRCz11
Vega	6	7,257,046 - 7,258,174	GRCv10

Mapped Clones containing sox21a
BUSM1-202L16	Chr: 6 Details
CH211-241A17	Chr: 6 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa10235	6	8,349,492	GRCz12tu	DIRECT		Sealy et al., 2025
	6	7,415,171	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	6	7,258,002	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	6	7,331,986	Zv9	DIRECT		Busch-Nentwich et al., 2013
	6		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	6		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	6		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	6		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
6	45.7 cM	sox25	Mother of Pearl (MOP)	Postlethwait, John H.	Data
6	150.04 cR	sox25	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
6	442.0 cR	sox21	Goodfellow T51 (T51)	Geisler, Robert	Data
6	25.5 cM	sox25	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z17212	SSLP	6		Sekimizu et al., 2004	Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
z6624	SSLP	6		Sekimizu et al., 2004	Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
unp172	STS	6		Sekimizu et al., 2004	Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
ts294e	Feature	6	0.23 cM	Sekimizu et al., 2004	Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.

OTHER MAPPING INFORMATION: No data available

Genomic Feature sa10235 is an allele of sox21a