ZFIN ID: ZDB-GENE-011128-2

Mapping Details

Gene Name: jagged canonical Notch ligand 1a
Symbol: jag1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 54,424,765 - 54,477,477 GRCz12tu
NCBI Map Viewer 1 54,424,765 - 54,477,477 GRCz12tu
Ensembl 1 51,104,984 - 51,157,660 GRCz11
NCBI Map Viewer 1 51,104,984 - 51,157,675 GRCz11
UCSC 1 - GRCz11
Vega 1 50,461,185 - 50,513,861 GRCv10
Mapped Clones containing jag1a
DKEY-210M15 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa168 1 54,450,407 GRCz12tu DIRECT Sealy et al., 2025
1 51,130,617 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 50,486,818 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 51,640,321 Zv9 DIRECT Busch-Nentwich et al., 2013
sa1989 1 54,433,472 GRCz12tu DIRECT Sealy et al., 2025
1 51,113,691 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 50,469,892 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 51,623,395 Zv9 DIRECT Busch-Nentwich et al., 2013
sa11248 1 54,441,152 GRCz12tu DIRECT Sealy et al., 2025
1 51,121,371 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 50,477,572 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 51,631,075 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39691 1 54,429,792 GRCz12tu DIRECT Sealy et al., 2025
1 51,110,011 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 50,466,212 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 51,619,715 Zv9 DIRECT Busch-Nentwich et al., 2013
sa45084 1 54,461,362 GRCz12tu DIRECT Sealy et al., 2025
1 51,141,572 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 50,497,773 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 51,651,276 Zv9 DIRECT Busch-Nentwich et al., 2013
la011260Tg 1 51,665,387 - 51,665,397 Zv9 ZFIN_Zv9 BurgessLin
la028179Tg 1 51,664,963 - 51,664,973 Zv9 ZFIN_Zv9 BurgessLin
kz4 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la011260Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la028179Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa168 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa1989 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa11248 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa39691 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa45084 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zko992a 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
zko992b 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 82.5 cM jag1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature sa11248 is an allele of jag1a
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