ZFIN ID: ZDB-GENE-980526-72

Mapping Details

Gene Name:	retinoic acid receptor, alpha b
Symbol:	rarab

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	31,872,527 - 32,087,230	GRCz12tu
NCBI Map Viewer	3	31,872,527 - 32,087,230	GRCz12tu
Ensembl	3	33,066,004 - 33,113,879	GRCz11
NCBI Map Viewer	3	33,064,437 - 33,277,633	GRCz11
UCSC	3	Based on NM_131399	GRCz11
Vega	3	32,934,290 - 33,127,907	GRCv10

Mapped Clones containing rarab
CH211-196P24	Chr: 3 Details
DKEY-242N9	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
sa20057	3	31,877,298	GRCz12tu	DIRECT	Sealy et al., 2025
	3	33,069,208	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	3	32,937,494	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	3	33,206,184	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa20058	3	31,877,969	GRCz12tu	DIRECT	Sealy et al., 2025
	3	33,069,879	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	3	32,938,165	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	3	33,206,855	Zv9	DIRECT	Busch-Nentwich et al., 2013
la015178Tg	3	33,225,179 - 33,225,189	Zv9	ZFIN_Zv9
la015179Tg	3	33,245,756 - 33,245,766	Zv9	ZFIN_Zv9
la024132Tg	3	33,227,345 - 33,227,355	Zv9	ZFIN_Zv9
la024134Tg	3	33,275,879 - 33,275,889	Zv9	ZFIN_Zv9
la028902Tg	3	33,257,278 - 33,257,288	Zv9	ZFIN_Zv9
la015178Tg	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la015179Tg	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la024132Tg	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la024134Tg	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028902Tg	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	75.2 cM	rara2b	Mother of Pearl (MOP)	Postlethwait, John H.	Data
3	51.6 cM	rara2b	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Markers Encoded by rarab
fj66e06 Chr: 3 Details

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	1068	DdeI	56.0
Forward Primer	GAGGGTCTGGAGGGAGGC
Reverse Primer	GGGGGTCTCTGTGTCTTTCG

Genomic Feature la028902Tg is an allele of rarab