ZFIN ID: ZDB-GENE-980526-531

ZFIN ID: ZDB-GENE-980526-531

Mapping Details

Gene Name:	retinoic acid receptor gamma a
Symbol:	rarga

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	23	38,891,325 - 39,066,506	GRCz12tu
NCBI Map Viewer	23	38,891,325 - 39,066,506	GRCz12tu
Ensembl	23	35,847,200 - 35,963,735	GRCz11
NCBI Map Viewer	23	35,847,200 - 35,965,288	GRCz11
UCSC	23	Based on NM_131339	GRCz11
Vega	23	35,748,397 - 35,864,932	GRCv10

Mapped Clones containing rarga
DKEY-148F24	Chr: 23 Details
DKEY-43N10	Chr: 23 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
sa32460	23	39,059,643	GRCz12tu	DIRECT	Sealy et al., 2025
	23	35,959,209	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	23	35,860,406	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	23	36,010,753	Zv9	DIRECT	Busch-Nentwich et al., 2013
la010912Tg	23	35,992,769 - 35,992,779	Zv9	ZFIN_Zv9
la014420Tg	23	35,950,008 - 35,950,018	Zv9	ZFIN_Zv9
la014421Tg	23	35,993,591 - 35,993,601	Zv9	ZFIN_Zv9
la022698Tg	23	35,977,271 - 35,977,281	Zv9	ZFIN_Zv9
la022699Tg	23	35,993,556 - 35,993,566	Zv9	ZFIN_Zv9
la022701Tg	23	35,997,974 - 35,997,984	Zv9	ZFIN_Zv9
la028558Tg	23	35,982,564 - 35,982,574	Zv9	ZFIN_Zv9
la028559Tg	23	36,002,569 - 36,002,579	Zv9	ZFIN_Zv9
la010912Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la014420Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la014421Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la022698Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la022699Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la022701Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028558Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028559Tg	23		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
23	125.1 cM	rarg	Mother of Pearl (MOP)	Postlethwait, John H.	Data
23	434.81 cR	rarg	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
23	5391.0 cR	rarg	Goodfellow T51 (T51)	Geisler, Robert	Data
23	108.7 cM	rarg	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Markers Encoded by rarga
fb01e02 Chr: 23 Details

Primer Sets:
Strain	Bandsize	Annealing Temperature [C]
SJD	624	36.0
Forward Primer	GGGCCATAACTCTGAAGATG
Reverse Primer	GAACCCGTTGAAAGTACACTG

Genomic Feature la028558Tg is an allele of rarga