Mapping Details

Genome Browser Chr Position Assembly ZFIN JBrowse 2 33,368,414 - 33,422,798 GRCz11 Ensembl 2 33,368,414 - 33,422,798 GRCz11 Vega 2 33,385,196 - 33,439,580 GRCv10 NCBI Map Viewer 2 33,335,963 - 33,422,798 GRCz11 UCSC 2 - GRCz11

Mapped Clones containing slc6a9
CH211-261P7	Chr: 2 Details

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
z22527	SSLP	2		Cui et al., 2005	Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.
z7632	SSLP	2		Cui et al., 2005	Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.
ta229g	Feature	2		Cui et al., 2005	Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.

OTHER MAPPING INFORMATION

Chr 2 Cui et al., 2005 Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2.  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.

Genomic Feature ta229g is an allele of slc6a9

Marker Type Chr Distance Publication / Person Comments z7632 SSLP 2 0.26 cM Cui et al., 2005 Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.   z22527 SSLP 2 0.97 cM Cui et al., 2005 Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.   slc6a9 GENE 2 Cui et al., 2005 Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the  ... Cui et al (J. Neurosci, 25:6610-6620) used bulk segregant analysis to map the sho locus to LG 2. The closest flanking markers were z22527 and z7632. Subsequent analyses using data from the zebrafish fingerprinting project and genome sequence identified a missense mutation in the slc6a9 gene to be the cause of the sho mutation.

Genomic Feature te301 is an allele of slc6a9
Chr 2 Luna et al., 2004 Luna et al. reported that the sho mutation maps to chromosome 2, and is therefore not a mutation in  ... Luna et al. reported that the sho mutation maps to chromosome 2, and is therefore not a mutation in the connexin 43 gene, which is located on chromosome 20.