ZFIN ID: ZDB-GENE-980526-400

Mapping Details

Gene Name:	orthodenticle homeobox 1
Symbol:	otx1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	17	25,658,898 - 25,664,587	GRCz12tu
NCBI Map Viewer	17	25,658,898 - 25,664,587	GRCz12tu
Ensembl	17	24,318,753 - 24,324,415	GRCz11
NCBI Map Viewer	17	24,318,768 - 24,324,415	GRCz11
UCSC	17	-	GRCz11
Vega	17	24,300,352 - 24,306,014	GRCv10

Mapped Clones containing otx1
DKEYP-74F1	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa96	17	25,663,139	GRCz12tu	DIRECT		Sealy et al., 2025
	17	24,322,967	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	24,304,566	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	24,151,124	Zv9	DIRECT		Busch-Nentwich et al., 2013
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
tud37Gt	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
17	128.4 cM	otx1	Mother of Pearl (MOP)	Postlethwait, John H.	Data
17	54.34 cM	otx1	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available

Genomic Feature sa96 is an allele of otx1