ZFIN ID: ZDB-GENE-041229-4

Mapping Details

Gene Name:	paired-like homeodomain 3
Symbol:	pitx3

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	13	7,903,700 - 7,922,838	GRCz12tu
NCBI Map Viewer	13	7,903,700 - 7,922,838	GRCz12tu
Ensembl	13	7,556,312 - 7,575,216	GRCz11
NCBI Map Viewer	13	7,556,315 - 7,573,670	GRCz11
UCSC	13	-	GRCz11
Vega	13	7,224,110 - 7,243,014	GRCv10

Mapped Clones containing pitx3
DKEY-183C23	Chr: 13 Details
DKEY-196H17	Chr: 13 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
hu3263	13	7,904,590	GRCz12tu	DIRECT		Sealy et al., 2025
	13	7,557,202	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	7,225,000	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	6,676,223	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa45	13	7,912,359	GRCz12tu	DIRECT		Sealy et al., 2025
	13	7,564,970	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	7,232,768	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	6,668,455	Zv9	DIRECT		Busch-Nentwich et al., 2013
hu3263	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	13		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa45	13		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
13	38.1 cM	pitx3	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z13611	SSLP	13		Shi et al., 2005	Shi, et al. (2005. Mech. Dev. 122:513-527) reports mapping pitx3 to LG13 near SSLP marker Z13611 on the LN54 mapping panel.

OTHER MAPPING INFORMATION: No data available

Genomic Feature sa45 is an allele of pitx3