Genomic Feature

nju222

ID
ZDB-ALT-250425-1
Name
nju222
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Xin Lou Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 5: 15944996 - 15948910 (GRCz11) (1) Details
Nucleotide change
CCGCAGGGATGACCACTTCCTCCGGTTCGTCCTTGACAGAAACCGTTTGATCCTCCACCTGGATTTCTTCCTCGGTTTCAGAGAAGGCGACGGAATCCTCAGCTTTAACTTCGCAAATGCTCTCCTCGCTCACCAGCACCTCTGCGGGTTTGGTGTAGATGTGGTCGAAGTGGATCAGTTCATTAAGGGCTTCCAGCTTAACTGGTGCGGGCCCCAAAGCTGCAGGTGCGGAGGAAGGTACTTGCTCTCCTGCACCCCCCACCAGCACGAGCTCCTGCTGAGGCTCCTGTGCTTCAGGAAGGTCTGTCTTGAGGAAGAGCTCGGGGTCAAGGATGTCCAGAATACCAAGCAGGAGATCAGACTGCAGGCGAAGAGGAAAAAGATATTGTTCGTGAGGTAATGATATTTTAATAAATGCATGTTTAGAGAAGATTTGGTCGTGATTAATGAGATTTGCTTGCAGTGTAAATGGTCAACGGTTCATAGAGAATAAGCATGCTAGCATCCAAACATCTGAAATTTGAAGCTAAATAAATTGAGCGCCCCCTGTTGACTGGCTGCAGTATGTCATAAACCGCACCCTTTTTGAAGTAAATAAAAGCAAATTTAGAATTATTTTACTCCATTTTTTTTTTCAAAATTATGGTTTCTGGCATTTTAGGGAGTTCTCATGATCTATACTTCAAACATTTGTTATTTGAATAAAGGTGCTTTCAGTTAGCATTTTGTGTTATAAAAACAGATGTAGCGTCACAGTTGTGTGGATGTAATTGTTGTGCATTTGATCTCGATGACTGCTACACGGTCTCTGGCTCCAAATGACATCGTCAGCACAAGACGACAGCAACGTTTTTACGTTATAGTGGAAATAACAGATTAGCCTTTTTATGGTTTTCTTTTAATATAATAGTCCACGCCAATGTATAATACTACTGTTTATTGTAGGTATGCTGATGTTGTGTCTTATTTTGCATGCTCAAGCAAGATGAATTGTGATTGGCTGGCCATTTTTTCATCATCTCAATATTGTTTTCCTATGCCATTGTCATTTTAGTTGTTATGGACTTGTTACAATTTTTTAAACAGTTTTTTTTTCCTTTTAGTTAATGGTTTTAAATGAACCTCCAAAATCCAAAAACTTAGAGCAAGAGATATTTACCTCAGAGTCTGCAGGGCCAGGGCTGTGAGTATCCATGGTGAAGTCTTCAGATTTGGGGACTGCTGGGCCTGCACCTGCTGCGGAGGCACACGTAGCCTGAGTGCTGCGGACTCAGAAGACCCGGTCACCAAACCTAAATCGCTCACTGCGGACTCCAGTACCTGAACCTAAACGACAATGAAAAGCTTTAGTAGGAAATCAAATAATAATTATAATATTAAACAGCTCCTCTGTGAAGTGTGAGTTTTGCTGAGAGCAGTCCAAATCGTTTACCTGCTCCTTTGTTTCCAAGGTATCCAACCCCAGTCTCTGTCTCAGCTCCTCATTCTCACTGAGCAGATCACTCGTCTTGTCTCGCAACAGCCTGTTCTCAACGTGAAGTTTCTGATTCTGTGGAAAACAGCAAAATTATATTTTCATAAATTATCTAAACATTATTATTATTTTATTTCATCATTTATAATTACATTTGTCTTCTGAACTACAAAGATCCTTGTACATCAAATAGAAAAAAAGCAAAACAATGGTCAAAGTACCTCCAGCTCCAACTCCAGCACTTGCTGTTCCAACTCCCCCATTTTTGCCTTTTTTCTGTCTCTTGCTGTCTGTGCAGCAACTCTGTTCTTTAATTTCCTAAAAAACAAAACAAAAAAAAACATGATTATTATGATTATTATTTATTTTTTACATTTATAGCTAGAAAATAAATACATTTTTATCTGGGACATGATACAGTGACTATACAATTTCAGTTTATTCATTTTCTACATTGTTATTTGAACCAGGTTTATTATTATGCAATCCATTTTGGCAGGGCTGAAAGAGTGTTGAGGAAATGGCGCATGCGCGGTCTCGCTCCTGCCACGCAGGCAGATGTGAGTATATTGATTCAGAGGGGGAGGGACTGACCGGCAAAACCCACTGATCTTGGCAGGGATTCAAAGTCTTCCATATGGAAGGGTCAAACTGGTTCGTTTAAAGCGTTAGCATTCCTGAAACGTACAAATTCGACAGTCTATATATAAAAGTAACGTTAAACATTCGCGCACTGATAAAGATATCTCGTTTTGAACGAAGCACGCTAGAAGACTTAACAGTGGCGTAGCGCAAAATGCGGAGGCCCCCCTGCAGGGATCACCGATGGGGCCCCCAGTTTTCAAGGGGGTCGGGGGGGTTTGGGGGCGGCAGAGCCAGAGATATACACATATATCTATGATCGGGAGTTTTCCTGGATGTTAGTATTTTTATTTTTTTTCAATTATGAAAATTATAATTTTACATCACTTTTCTACATTGATGGATCACTTATCGCACGGGCATTCCTGACAAAAAGCTTGTGTTTGTGTGTACAGAAATGTACTATTCACCCTCCCTGTTAAATTTGATCTAATCATGTGCTGAAACACAGCTCCTCTCCTGCTTTCACTGCTCATACTGACGGGGGGAGCGATTCGTTTGTGATTGAATCTCCGTTATGAACGACTCGTTCACTAGCTGACAATAATACAAGTTTCTGGCAGCGCAGCATCTCGTTGTCATATTTCTTTTTCATTGTTTGCTGATTTTATTCAACAATACTAGCATAAGCCGAGTGTTTAGTGCGAATTGGAGCTACTTTGCCTTATGCTGAATGCAGTAAGTGACTATTATCATCAATAACGTTACCTGATTAGCACAAATTTCAGAACATACAAAAACGTAAAAAACTTTATCCTACCTATTGAATGTTCTGCCTTTGTGCTTTGTTTTCTTTGTTTGCTCGTTACTACACTCGTAGACAGCGCTACAGTCCCGCATCTTCACGTAATAACACTTGTCTAGTGCGGTTGAATGACATTTGTCCTGGGAGCACTGTACCAATGTGGCGGCGCTATTGACGCATGCTCAGGGTCCCTATGCGATATCTAGTGTATATATCTATGTCACAAATTGAGGTGCGGGAAAAGGAGGCGGAGTGGAGCGACAACGCGGGGAATCCTACACAAACTGAGGAGCGATCACAAACCGAAAGCGGCGAGAGCGTAAAAGTAGCCAGAAGTCATTCATTTTTTAACGAGAACCGGTGTCGAGAAACAGCGGCGCGTCTTCATTGGCTATGACGCGGTTCGGCGGCAAGCAATCAGAATGAAGTAGTCCACCGCTTGAGAGGTGTTCAGAGAAAACAGACCTGTGAACTTTGGTTCCGTCTACACTTGTTCCCAAGAGTTTGATTATTGCGGTTCCTGGATTTTAAATTATTGAAAACCGCGACGACGTGGGGCCCCCTAATCACGCGGGGCCCCCCCGCGGTGCGTGCCCTGCGGGCCCGTCCGCTACGCCACTGAGACTTAACACATTTGTCAAAATAAATCCGAGCTCGCCTCACCTTCGAAGTGCTTTTTCCTCTGGGCTCAGATGTGTGAGTCTCTGTCGTTTTCTCAGTGGTGGTCCAGAGGTGGTGGAGTCTGAATCTGAAGAGGCTTGATTCGGTATCATGACAGATATTGAGCGGCTGTACCCGCCCTGTGTCGCGCCGGTCGAAGCGCTCTGTTTTCCCGATATCAGGAGGACTTTGTGGGCTCCTCCGGTCCCTGCTGTAACTACGACCATTTTTGTGTGGTTGTCTGGATTAGGATCTGTGTTGAGACCCCTTCTGTTTTGATTAGGGGTGGGAAATTTCCGAAAAAAATCGCCTTAATTCCTTGTATTATCTTCCCCTTAGATCTCTGAAAACTGAAGGAAAGAAACGCGAGCGTTCTTTTTCTACCGTCGTGGTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
3915 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ATTACAGAAAACTCTGGAGAGGTACAAATAAATAGGTCTACTTTTAAAACGATTATCCCCAAACCCCTTCCCCCGACAAAAATACTGGGTCACGTTTGAACTGTACATAAAGTTGCAAACAAAGTCTTGCGCACAAACAGACTCACAATTTATCAACAGAAAGCCTTTGGTCTAAAAATGGCAGGATTATATGCTGCGGCTTCTGCCAGATTATCACTATGTTGCACGTGGCAATCACGTACAATAAAGGAGCAAAGGCAAGCGGTATTCGCAATCGTATGCAAACTTTCAGACGCTAATCAGTTGGGGGAAGAGTTCGGATGCAAACATGTCATCCCACGAGCCCTCGGAGCAAAGAGGGGATGAAATGTTGCTGAAAGGGGAAGGAGACCTCTCATATCCAGAGTCACTATATGCATCCGTCAGATACGAAGCCTTCTCGTAGCCGCCGAAAGAGGTGTCAGACAGGAAGTCGTCAGCCGCGTCTGGAGTTTGATTCT
CCGCAGGGATGACCACTTCCTCCGGTTCGTCCTTGACAGAAACCGTTTGATCCTCCACCTGGATTTCTTCCTCGGTTTCAGAGAAGGCGACGGAATCCTCAGCTTTAACTTCGCAAATGCTCTCCTCGCTCACCAGCACCTCTGCGGGTTTGGTGTAGATGTGGTCGAAGTGGATCAGTTCATTAAGGGCTTCCAGCTTAACTGGTGCGGGCCCCAAAGCTGCAGGTGCGGAGGAAGGTACTTGCTCTCCTGCACCCCCCACCAGCACGAGCTCCTGCTGAGGCTCCTGTGCTTCAGGAAGGTCTGTCTTGAGGAAGAGCTCGGGGTCAAGGATGTCCAGAATACCAAGCAGGAGATCAGACTGCAGGCGAAGAGGAAAAAGATATTGTTCGTGAGGTAATGATATTTTAATAAATGCATGTTTAGAGAAGATTTGGTCGTGATTAATGAGATTTGCTTGCAGTGTAAATGGTCAACGGTTCATAGAGAATAAGCATGCTAGCATCCAAACATCTGAAATTTGAAGCTAAATAAATTGAGCGCCCCCTGTTGACTGGCTGCAGTATGTCATAAACCGCACCCTTTTTGAAGTAAATAAAAGCAAATTTAGAATTATTTTACTCCATTTTTTTTTTCAAAATTATGGTTTCTGGCATTTTAGGGAGTTCTCATGATCTATACTTCAAACATTTGTTATTTGAATAAAGGTGCTTTCAGTTAGCATTTTGTGTTATAAAAACAGATGTAGCGTCACAGTTGTGTGGATGTAATTGTTGTGCATTTGATCTCGATGACTGCTACACGGTCTCTGGCTCCAAATGACATCGTCAGCACAAGACGACAGCAACGTTTTTACGTTATAGTGGAAATAACAGATTAGCCTTTTTATGGTTTTCTTTTAATATAATAGTCCACGCCAATGTATAATACTACTGTTTATTGTAGGTATGCTGATGTTGTGTCTTATTTTGCATGCTCAAGCAAGATGAATTGTGATTGGCTGGCCATTTTTTCATCATCTCAATATTGTTTTCCTATGCCATTGTCATTTTAGTTGTTATGGACTTGTTACAATTTTTTAAACAGTTTTTTTTTCCTTTTAGTTAATGGTTTTAAATGAACCTCCAAAATCCAAAAACTTAGAGCAAGAGATATTTACCTCAGAGTCTGCAGGGCCAGGGCTGTGAGTATCCATGGTGAAGTCTTCAGATTTGGGGACTGCTGGGCCTGCACCTGCTGCGGAGGCACACGTAGCCTGAGTGCTGCGGACTCAGAAGACCCGGTCACCAAACCTAAATCGCTCACTGCGGACTCCAGTACCTGAACCTAAACGACAATGAAAAGCTTTAGTAGGAAATCAAATAATAATTATAATATTAAACAGCTCCTCTGTGAAGTGTGAGTTTTGCTGAGAGCAGTCCAAATCGTTTACCTGCTCCTTTGTTTCCAAGGTATCCAACCCCAGTCTCTGTCTCAGCTCCTCATTCTCACTGAGCAGATCACTCGTCTTGTCTCGCAACAGCCTGTTCTCAACGTGAAGTTTCTGATTCTGTGGAAAACAGCAAAATTATATTTTCATAAATTATCTAAACATTATTATTATTTTATTTCATCATTTATAATTACATTTGTCTTCTGAACTACAAAGATCCTTGTACATCAAATAGAAAAAAAGCAAAACAATGGTCAAAGTACCTCCAGCTCCAACTCCAGCACTTGCTGTTCCAACTCCCCCATTTTTGCCTTTTTTCTGTCTCTTGCTGTCTGTGCAGCAACTCTGTTCTTTAATTTCCTAAAAAACAAAACAAAAAAAAACATGATTATTATGATTATTATTTATTTTTTACATTTATAGCTAGAAAATAAATACATTTTTATCTGGGACATGATACAGTGACTATACAATTTCAGTTTATTCATTTTCTACATTGTTATTTGAACCAGGTTTATTATTATGCAATCCATTTTGGCAGGGCTGAAAGAGTGTTGAGGAAATGGCGCATGCGCGGTCTCGCTCCTGCCACGCAGGCAGATGTGAGTATATTGATTCAGAGGGGGAGGGACTGACCGGCAAAACCCACTGATCTTGGCAGGGATTCAAAGTCTTCCATATGGAAGGGTCAAACTGGTTCGTTTAAAGCGTTAGCATTCCTGAAACGTACAAATTCGACAGTCTATATATAAAAGTAACGTTAAACATTCGCGCACTGATAAAGATATCTCGTTTTGAACGAAGCACGCTAGAAGACTTAACAGTGGCGTAGCGCAAAATGCGGAGGCCCCCCTGCAGGGATCACCGATGGGGCCCCCAGTTTTCAAGGGGGTCGGGGGGGTTTGGGGGCGGCAGAGCCAGAGATATACACATATATCTATGATCGGGAGTTTTCCTGGATGTTAGTATTTTTATTTTTTTTCAATTATGAAAATTATAATTTTACATCACTTTTCTACATTGATGGATCACTTATCGCACGGGCATTCCTGACAAAAAGCTTGTGTTTGTGTGTACAGAAATGTACTATTCACCCTCCCTGTTAAATTTGATCTAATCATGTGCTGAAACACAGCTCCTCTCCTGCTTTCACTGCTCATACTGACGGGGGGAGCGATTCGTTTGTGATTGAATCTCCGTTATGAACGACTCGTTCACTAGCTGACAATAATACAAGTTTCTGGCAGCGCAGCATCTCGTTGTCATATTTCTTTTTCATTGTTTGCTGATTTTATTCAACAATACTAGCATAAGCCGAGTGTTTAGTGCGAATTGGAGCTACTTTGCCTTATGCTGAATGCAGTAAGTGACTATTATCATCAATAACGTTACCTGATTAGCACAAATTTCAGAACATACAAAAACGTAAAAAACTTTATCCTACCTATTGAATGTTCTGCCTTTGTGCTTTGTTTTCTTTGTTTGCTCGTTACTACACTCGTAGACAGCGCTACAGTCCCGCATCTTCACGTAATAACACTTGTCTAGTGCGGTTGAATGACATTTGTCCTGGGAGCACTGTACCAATGTGGCGGCGCTATTGACGCATGCTCAGGGTCCCTATGCGATATCTAGTGTATATATCTATGTCACAAATTGAGGTGCGGGAAAAGGAGGCGGAGTGGAGCGACAACGCGGGGAATCCTACACAAACTGAGGAGCGATCACAAACCGAAAGCGGCGAGAGCGTAAAAGTAGCCAGAAGTCATTCATTTTTTAACGAGAACCGGTGTCGAGAAACAGCGGCGCGTCTTCATTGGCTATGACGCGGTTCGGCGGCAAGCAATCAGAATGAAGTAGTCCACCGCTTGAGAGGTGTTCAGAGAAAACAGACCTGTGAACTTTGGTTCCGTCTACACTTGTTCCCAAGAGTTTGATTATTGCGGTTCCTGGATTTTAAATTATTGAAAACCGCGACGACGTGGGGCCCCCTAATCACGCGGGGCCCCCCCGCGGTGCGTGCCCTGCGGGCCCGTCCGCTACGCCACTGAGACTTAACACATTTGTCAAAATAAATCCGAGCTCGCCTCACCTTCGAAGTGCTTTTTCCTCTGGGCTCAGATGTGTGAGTCTCTGTCGTTTTCTCAGTGGTGGTCCAGAGGTGGTGGAGTCTGAATCTGAAGAGGCTTGATTCGGTATCATGACAGATATTGAGCGGCTGTACCCGCCCTGTGTCGCGCCGGTCGAAGCGCTCTGTTTTCCCGATATCAGGAGGACTTTGTGGGCTCCTCCGGTCCCTGCTGTAACTACGACCATTTTTGTGTGGTTGTCTGGATTAGGATCTGTGTTGAGACCCCTTCTGTTTTGATTAGGGGTGGGAAATTTCCGAAAAAAATCGCCTTAATTCCTTGTATTATCTTCCCCTTAGATCTCTGAAAACTGAAGGAAAGAAACGCGAGCGTTCTTTTTCTACCGTCGTGGTG/- CGCGGTGATTGGCTGCCGTACCGCTGACGTATGTGGACGTCAGTCTTTCCTTGGGTTAAAGTAGCTGATGTAAGTTTCAT  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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