Genomic Feature

u1001

ID
ZDB-ALT-230428-4
Name
u1001
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Jenkins Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 9
Variants
Variant Type
Small Deletion
Variant Location
Chr 9: 34497757 - 34497763 (GRCz11) (1) Details
Nucleotide change
AAGGCTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GGGTTCAGAAATAAAATGTAACACTAGAACCATTCTCCCGTAAACACGCAATTCAGCACAATCAGTGCTTCAACATTATAACTACATCTTTCACATGTGCTGTAGGAACTATAAATGGGGCTAATTAGCAAAGATTATGTTTAGAAATCATTTTGTTTAAACTTCTGATTCCCATCATTTACCTTGACGGGTTCTACACAGGATAAGTAATTTGACATATAAACAGTGGTGATACTTTTCCACTGACTTCAAGAAAAGTACAACCCTCAGACTTGTAAACAGTTAGAAGTTAGTTACACAAATGAACAATTTGCAGAATGGGTAAAAGTGACACGTTACAAACCACACTTACCTTGGCGACCAGCCCCATGTCTTTAATAGTGACTCTTTCATCAGGAAATTGAGAAAATATTTTTTCAATCTTGGAAATGAGATTGTCTATGTTGATGTTGGCCTGAGGCTGTCCTCGAGGGAAGTAGAACTTTGGAATGCTTTCACTT
AAGGCTG/- GTGTAACGGGCTCCTCTTTCTTGGCCTGCGCCTGCTGAAACAGACAGAAATAATAACTATTAGCCACAAGACTCGTCGCAGGAGAGATGCAAGTCTCTGCTGAAAATTACAGCTCAATCAGCATTTCACAGTGATGGCTTAAGTTGTGATGTCAGTGTGCATAAAACACAATTTGAACAAGTCTGGCAGATACACACCCTCTCAACATACCTTCTCAAAGAATTATGAGCCATCTCAATGTTTTTTTTTAACAAATCTAAAATGTAAAGTTTTTATTTATTGGTATTAGGGATAAAAACCTTTTACACCAGTTCACAGATAAAGGCCTAGTACTTAATTGATTTTTTTTAGCAAACAAACAAGCATGTCTATTGACTAGGTCTGAAGTGCAAAAAAAGGAAAACCAGTGCAAACCTGTTGTGGTTGTGTAAAAGGCATCATTTTCTGAAAGGAATCTTTTTTTAAGAGTTGCACAACTTGAGAAAGATTGCACATTTAGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
ppp2r3bu1001/u1001Homozygous♀+/- ♂+/-7 figures with image from Seda et al., 2023
ppp2r3bu1001/+HeterozygousUnknownFig. 4 with image from Seda et al., 2023
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Supplemental Information
Genotyping protocol
None
Citations