Genomic Feature

hg138

ID
ZDB-ALT-220104-7
Name
hg138
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Browsers
Variants
Variant Type
Delins
Variant Location
Chr 22: 39477881 - 39480499 (GRCz12tu) (1) Details
Nucleotide Change
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTCGTGAGGTAATGGGCT/AGGT
Variant Notes
Deletion 2618 bp that is -1955 bp (upstream the TSS) of sox2
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp inserted / 2619 bp deleted in 5' UTR (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GCTGACCAATCAGAGCGCGTCTGCTCCCTCGGTTTGCATAAAGGGGCGGGGTTACGGACGGTCAGCAGTGCAGCGCAGAGCCACAGGCAGTGGCTGTGAGTGTGTGTGTGTGTGTGTGTGTTTATGAGAGAGCTAAAGTGAGAATATTTCACACAAACCATTTTCCAATCAAACTCTGTATGATCTTAAGATTCTAAATAAACATTTAAAGTTTTATTATTAGTATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTTATCGCTTTGTTTTTAGTGTAAGTTTGCGTATTCAACACATCAGTTAAACTCTTAAAGCACTGAAAATAAAATAAAGATTTTTTTAAGTTAAAACGGCAAGCTCATAATATTAAAAACTTCCAAAATAATGCGTGAATAAGCCGAATAAAATATAGCTATTTATTATTTAGTTCGCATTTAAAAATGAGCAGCGGCTTGTTTTATTAACGAATACAATAAAGTAA
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTCGTGAGGTAATGGGCT/AGGT GGCTTTTTTCAAACGCAAAGAATGGCTATTTGATAAAGATTTTTTACTTCAGAAAATACACTGCCATGTCATCTGTATAG  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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