Genomic Feature

sh475

ID
ZDB-ALT-211001-1
Name
sh475
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
Lab of Origin
van Eeden Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 17
Variants
Variant Type
Small Deletion
Variant Location
Chr 17: 16420952 - 16420955 (GRCz11) (1) Details
Nucleotide change
CCTT/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTTTAAATAAAGAGACAAATACAATCACATTTGAAAGAGTCAATTTCTAAATAAATACTTTACATGTGGTAAACATACTATTAATTGATTGAATTTACAAAAATTAAAACATTGTGATGCATATCATTATCAGGACATGAGATGACTTATTTGATGATATGAGATTTTTGTCATATTGCCCAAACTGGTCAAATATGTTTTTTAAAATAAAAAATGGTGAATGTAAAACTCTTGAAATACCTTTGATATGCAGTGCTCCAGTGTTGTACTTTTTCGGTATCCCAGTGACTTTGTTTAAATAAAAACGATAAATGTCATTTGTAGGCATTAAGTTGGTCTCAAAGAAATCAGCTGGCTCTTCTTTATAATAACTAGTGCCGTGAGGGCTTGGAGGACGCTTGTCTTCAGTCTTCTTCTTCCTTTTTGGACTTATATTTACCTTTTGGGGTTCATTTCTTGGAGCAGGAGTTTCATCATCACTGCTGGAGAGGTTCCAGCCC
CCTT/- CCTCAGTTTCTCTCTTCCTTTTTACAGCAGGGGAAGCATTGCGTTCATATTTTACAGGATTGGCTTGATTCACATGTGCTGATTTTCTGGCTTCGGATCCCATGGAGGGAGCGGATGCTGTTTTCACAGAATTCTCATTGCGTTTTGGACTCAGTCTGGGCTCCTGCTTGAGGAATGTGGGGGTCTCTTCAGGTTTGCTTTGCGAATCTGGTTTCACAATTGGTTTAACTGAATCCTTCTGAGGTGTTGGAGGAATAATGTCCTCGTCTTCACTATCTGATATGCTCCACTTGCCATGTTGACTGTCTTGGGACATTTTTGTTCAGCTGTGGATTACAAAGAGTTCAAGAATACTATTATTACTATTATTATTATTATTCTGCCTCTGGACTGCTTTGCTTATTCTGCCTCAGGATTGTTTGGCCCCTTAATTGCTGCTTGCAGCTATATTTATTATTTACTTTTATAACTGTATACAATTGAGGTAAAGTTGGCTTAAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
tdp1sh475/sh475Homozygous♀+/- ♂+/-4 figures with image from Zaksauskaite et al., 2021Fig. 6 with image from Zaksauskaite et al., 2021
tdp1sh475/sh475Homozygous♀-/- ♂+/-2 figures with image from Zaksauskaite et al., 2021
tdp1sh475/+Heterozygous♀+/- ♂+/-2 figures with image from Zaksauskaite et al., 2021
tdp1sh475/+Heterozygous♀-/- ♂+/-2 figures with image from Zaksauskaite et al., 2021
tdp1sh475/+; tdp1sh476/+ComplexFig. 2 with image from Zaksauskaite et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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