Genomic Feature

sbu90

ID
ZDB-ALT-201201-2
Name
sbu90
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sirotkin Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 21
Variants
Variant Type
Small Deletion
Variant Location
Chr 21: 11492823 - 11492829 (GRCz11) (1) Details
Nucleotide change
TGCCAAC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CCTGTTCTTTTTTCTCTTACCTTCTGTCTTAACTTGCCATCCCTGTCTCTTTACTTTGCTTCTATGGCTGTTATTATTTTCTTAGTGCTGTTAGCAATCTAGCCAGTGCTATGAGACTTGAGGAATAGGTTTTTCATTAGGATGCTAGATCATACTTTTTAGGACTACTTACTGTAGTGGAGCTTTTTCTGATTATTTGCACTTTTTCCATCTGGTTTTCTCAGCCCATTTGGAAGGTTTAAAGTAAACAGCGAAGAAGAAGAAGAAGATGCCCTCACCTTATCTTCAGCTATGTGGTTTTCTTGGGGTGTCTTGTTGAACTCTGGAATTGGAGAAGGTGTTGACAAACTTTGTTTCTGATGATGTTCAAATTAAATCAGTTGACATTTGACACATATTTGACTACTTGCATGTTGTCTAGGTGCCCCACGTAGTTTTTCAGCAAGAATATTAGGAATGGTGTGGGCTGGCTTCGCTATGATTATAGTAGCATCCTATAC
TGCCAAC/- CTGGCTGCCTTCCTAGTGTTGGACCGGCCTGAGGAGCGCATCACCGGCATCAACGACCCAAGGGTACGCTTCTCTTTGTACCTGAACCACCAAAGAAAAGGTTTTTAAGATTTATAAAACAAGTTTGCTTTTTTCAGCTGAGGAACCCATCAGACAAATTCATCTATGCCACAGTGAAGCAGAGTTCGGTGGATATTTACTTCCGGCGACAAGTTGAGCTGAGCACCATGTACCGCCACATGGAGAAGCACAACTACGAGAGCGCCGCTGAAGCCATCCAGGCCGTTCGGGACAAGTGAGTCCCTGTTGGGTAGACACTGGCAGGTCTGACCTTATGGTCTGTCAATCAGTCACTCGATCATAAGGGTCCTGGGCCTGCAGGTCTCAGGTAAATTAATCAGTGTCAGCACTTACTGCACTAACCTGTGACCCTGGCCCATAGCCCAGCACAGGAGAGGCCCAGCTATGTGCCACACATAACGTTTATTAACAATAAGCTA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
grin1asbu90/sbu90Homozygous♀+/- ♂+/-4 figures from Zoodsma et al., 2020
grin1asbu90/sbu90HomozygousUnknownFig. 4 with image from Zoodsma et al., 2022
grin1asbu90/sbu90; grin1bsbu94/sbu94Complex6 figures from Zoodsma et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations