Genomic Feature

um216

ID
ZDB-ALT-200928-2
Name
um216
Synonyms
  • 5 bp deletion (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Lawson Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 20: 39593988 - 39593992 (GRCz11) (1) Details
Nucleotide change
CTCCG/-
Variant Notes
mutation induces a frameshift at aa 52; additional 2 aa then stop.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
GAGTGAAAAAACTAAAACTTGTTTCCCCTCCTAACACAATATATTTTATTTTGAGAAACATTTACAATATTTTGGAGCAGTAAACATGTCAGGCAAATAAATCAAATGTATCCTTGACTTCTGCTGTCTTCATTAGTTTCAAAAATGGACATCTTTTTAATTTAAAATGGCATCTTGGGATATCTTTTCTGCTGGAGATACTGACATCAAAAAGCTTACATATGGCGTAGGAACGGTAGAGCAGAAAGTTTTGCCAGTTTTAAAACCTTGACTTTTCCAAATCGTGGTAAACCTTTAGAACGGTTATCATCCCCAACTGCAAGGACGTGAACTCACCTGTTTCTCAAAAGCTGTTGGCACCAGACGACGCAACTCTGATAAGCTATTATTTATCCGGTCCCTTCTTCTTTTTTCAATGATCTGTAATATATGAAATGTTTAATGTGTTTGAAATATTTAACAAACATTTAAAACATCGATAAAAAATATGAATTACCCCT
CTCCG/- CTTCTTTCTGGCCATGACTTGGGATGTCGTTGTAGGTGAGCCACATCTTATAAATGAACCATTGCTTTGGCTGGGAATAAAAAGGATAAATACATATCAGTACACTGCAAAAGGGTTTTGTTAACTTTAAAAATTAACTTTTTTTTCCACATTAGTTTTATTTTGATTTTGGACAAACAAATCTTGTAACTTTAGATCAGGGGTGCCCAAACTTTTTCTTATGAAGGGCCAAAAGACAAGCATGACTGCTGCGGGCCGAATGTTATGTGAGCAAATCTATGCAAATGTCAAACTTGTCGTGAAAAAAATAAAGTTGTCACTAAAATACGGAAACCATTTCTAAGTTTTTTGTGCAAGCAAGTATTTTACTCTACTTCAGAAATACTCAAAAATGCATCTGTCAATGTTTTCAAACTACTATATTGATTTACAAGTTCACATTAAGTTTGCAAGTTCACATCCGTCACATTCACAACAAAGAGATGTCACATACATAACCA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations