Genomic Feature

zdf38

ID
ZDB-ALT-200715-8
Name
zdf38
Synonyms
  • +22 (1)
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
A. Thomas Look Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 14: 10665430 - 10665452 (GRCz11) (1) Details
Nucleotide change
TTCCGAGGTCCTGAGTTCCGTAA/ACTGGTGGTGAAGCCAGAACCAGTTGCTAATGAAACTAAAGATGC
Variant Notes
The mutation resulted in a truncated Atrx protein lacking both ADD and  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
45 bp inserted / 23 bp deleted in Exon 4 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GGTATTTAATCAAGCAGAACTATAGTGTGAAAACATGTATTTACTCAATAAGTGCATCGTAACTAATTATTCATTTCAGTGGTATTCATTTAATATCAATTTCATGCTTGCAGTTTCATTTTCATGGGAATTGTGCTGTTTGGGGAAAGCTGTAGATATTAGGTTATAAAACGTTTAGAGCAGATACATTGAGGATATTAACTGGAATAGTCTAATAACCAATTTTATTCTATTTTGAATGAAAGAAAACCATCATTTGTGACCAAGCACACTGCCTTAGATGAATCTGAATGTGCGAATGAGAGTGGAGGTGAACCCTGCGCAGATGACAGCATGCAGAGCAGTTTGGATATTAGCAAGCTGCCACAAGGTTAGTCCTCTGTTCCGATCAGTCTTCCTTAGCAGTTTGTTTAAGATGCACACTGAATATCCTGGCTTCACATTTTGCAGGCACAGTAGTGGTGAAGCCAGAACCAGTTGCTAATGAAACTAAAGATGAA
TTCCGAGGTCCTGAGTTCCGTAA/ACTGGTGGTGAAGCCAGAACCAGTTGCTAATGAAACTAAAGATGC CAAGGGAGGCAAAGCGAAAGAAGAGGGTGCGCGGAAACGTCCTGGTGAGTTGATTTAAAGTAATTTAAATTTCAGTATAGTTAAAGATACTTAATATAATTAATATATTAAGTATATATTATAGTTGTTTTTTATGTTAAAGTCTGTAAAATCAAAATGTATTTATTTTTCTACCACACATTGTTATTTTTTAGGTAAACAATTAATCCACCTAAAAAAAAAAAGTTTGTTTTGTTGATCTTCAATCAAAGTTATCCGCTTGTTAAGTGGTGACGTGTTTGTGACGTATGTATACTGTTTCCGGGTCCAAGCCGCCATTCATTTGAGTGGAGAAATCATTTGTTTATGATCACGTTTTATTCCTATCACACATTAAAGTTTATTTTATATAAAATCATAGTGTGCACAACAATCTCTGGGCTTGCTGCATAACAAATACCAAAAATTTAGCAATTTATAAAAAATGTATCACTTTCTGGGCATCGGATATTAGGCATGGA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations