Genomic Feature

ca307

ID
ZDB-ALT-191030-7
Name
ca307
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
McFarlane Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 4
Variants
Variant Type
Delins
Variant Location
Chr 4: 15420035 - 15420040 (GRCz11) (1) Details
Nucleotide change
AAATAC/TGTGCCCATCCTAGCTGTTACAAGCTG
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
27 bp inserted / 6 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ACCAAGAGGAACCTCAACATAGGAGTTAAATGCAGTGTCATCCTTGCAGAGTCTAACTAGTTTAGAAGTGTACACCTGTTCACGCCCAGCTGAGGATGACCCTGTAGTCGGTCCTCCGCCCATTTCAGGTTGCAATGTGAGAAAATACACAAAATTTCCACTGCTGAACCCATAGACGTAATAGATGTCAAAGTCTGGTACCACTGTGAATGTATCCGATGGGATTTTAATCATAGAGGCAACAAATTCATCGTGGAAGACGTAGGCAAACATCCCATCCTCCTCGGAGTTCCGGGTGAGCTTACGGCTGGATATTGTTGGGAAGTACTCTGGTCTCCCATCAACAGCTGTGGCCACGAACAACTTATCAGGCGAGGCATCACCATAAGACACGATGACCCCAAACACGGAGCCGCTCTCATTGACGCCAGAAAGGTAGTGCTCTTTTTTATGAAAGGGCTCTCCAAGTTTAAAGAGATCATCCAGGCGGAGGAGTTTGC
AAATAC/TGTGCCCATCCTAGCTGTTACAAGCTG CCTGGTACAAGCTGCCGCATGCCAGCAGCCGGTTCTCGCGGTAGTCCATGAGCAGCATCTTATTGACGTTATTAGTCAACGTAAGGGGTTCGCTACAAGGCTGCACTATACGGGGTGGGTAGCAGTTCCGGTTATCCTCATCTGGACCGGTCTGATGTGACACCTGTATGTCCAGTCCAGGTGAGAGTTTGTAGATGCGGTTCACTGCCCCAAGATACACATTCCCATTTCTGTGGTCCACCGCAAGATGGTTAAAGGTCCATTCTGTGTTTTCCACCCGAAACGTACTGTATTCCTCATGTACTCTAGTTGCAGCTGACGGTTGTTGTGGTCTTGCAGCCACAAGGGGAAGCAACAAGACAACAACGCAGCAAGAAAAAGTAAAGTTCCATCTCCTATTGTGAAAAGCCATTGTCCTGGATCCTTGGGGGAAGAGTGTCTCTCTGTCCACTGCTCACTCTGTGTTCTGTTTTAGTATTCAGGCTTCTTGTTAAGTTGGG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
plxna4ca307/ca307Homozygous♀+/- ♂+/-Fig. 4 with image from Nurcombe et al., 20232 figures with image from Nurcombe et al., 2023
plxna4ca307/ca307 + MO1-cluComplexFig. 7 with image from Nurcombe et al., 2023
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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