Genomic Feature

nce16b

ID
ZDB-ALT-190211-2
Name
nce16b
Synonyms
  • tj16b (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Fürthauer Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 12
Variants
Variant Type
Small Deletion
Variant Location
Chr 12: 28507116 - 28507119 (GRCz11) (1) Details
Nucleotide change
TCTG/-
Variant Notes
This frameshift mutation disrupts the P-loop and deletes the actin- and  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTACTACCTAAATATTGTATGCCCTACATATTTTTATAGTAGGTGTTATCTTTATCAAGTTACAGAGATAAAATACCATATAAAGAATAGTAGACTTCCCTATCATGTATGTATCATGCTGTTATATTTCAATTAGCATGACCTGGCACTATTTTAATCTCCGCCCTAAATTTAACTTCTATCCCCATCCCTCGTGTGAAACTAAATCACAATGCATCATTCATTCACTCACTACTTGATTTTTCTTAACCATAGCTAAACAAGCATTTGTACAACTATGAAGTCCATCTCCATAAACAACATCAAACACTTGTGAAATGTTCAGAAGTTGTTAATTATAGCATTAAGCAGGCATGAAGAGCAGTGTGTCTTTAACATAACCCATCACTGCAGCAGAAATGAGAGAAACAGAAAGCTTTTGTTGAACGTACCTCTCCACCTCTGCTCTTTGGCTGGGATTGGTGATAGCAGCGATATATTGCATAATGTATTTACTAGCC
TCTG/- TTTTTCCAGCTCCACTCTCCCCTGCAAAATAAACAAATGACAATGAATACCTTATAGATATAAAATATAATTTGACTTTACTGTAACTTAAATAACTATAAGATTATGTGAAAAAAAATCGGAGACCATGTGAAAATGTATTTATTTAGCAGCATATTTTTATAGATTATATGCTTTAAAAAAAAGAATAAACATGTTTCTTTTAATAATGTAATATTTTTACATACCAGTGTCAGTGAAGAAATTATAAGAAAATTAAGAACAATATAAATAATGAATTAATTTCCTTTCTTTTCATAAATGTTAAATGCACAAGCATAAATATTATATATATATTAGTGCATTACACTGATTAACAATGACCATGTAACACTGAAGGCTATGACAATGATGCTGTATAACTGTAAATATAATATTATATTATTTCAGAAATTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCTACTGCGTAAAAACTTGCTTATAAAGTTGGCGGTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
myo1dnce16b/nce16bHomozygous♀-/- ♂-/-4 figures with image from Juan et al., 20182 figures with image from Juan et al., 2018
myo1dnce16b/nce16bHomozygous♀-/- ♂+/-Fig. 1 with image from Kurup et al., 20242 figures with image from Kurup et al., 2024
myo1dnce16b/nce16bHomozygous♀+/- ♂+/-Fig. S1 with image from Juan et al., 2018
myo1dnce16b/+Heterozygous♀+/- ♂+/-Fig. S1 with image from Juan et al., 2018
dnaaf1tm317b/tm317b; myo1dnce16b/nce16bComplexFig. 1 with image from Kurup et al., 2024Fig. 3 with image from Kurup et al., 2024
myo1dnce16b/nce16b + MO1-dnaaf1ComplexFig. 3 with image from Kurup et al., 2024
myo1dnce16b/nce16b; myo1gnce18b/nce18bComplex2 figures with image from Juan et al., 2018Fig. 2 with image from Juan et al., 2018
myo1dnce16b/nce16b; myo1gnce18b/nce18bComplexFig. 1 with image from Kurup et al., 20242 figures with image from Kurup et al., 2024
myo1dnce16b/nce16b; vangl2m209/+Complex3 figures with image from Juan et al., 2018
dnaaf1tm317b/tm317b; myo1dnce16b/nce16b; myo1gnce18b/nce18bComplexFig. 1 with image from Kurup et al., 20242 figures with image from Kurup et al., 2024
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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