Genomic Feature

ihb1227

ID
ZDB-ALT-180718-1
Name
ihb1227
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Xiao Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 7
Variants
Variant Type
Small Deletion
Variant Location
Chr 7: 24207282 - 24207285 (GRCz11) (1) Details
Nucleotide change
GAGC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 3 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GAAGTCGAGTATACCTGGAAAGAGCTTGATTAGCTGGTTCAGGTGTGTTTAATTAGGGTTGGAACTAATATATGCAGGACACCGGCCCTCCAGGACCGAGTTTGGACAATTATGCCATCAATTATGCCATAAAAAAGGATTTAAAATGCCTTAAAGGGCTTAAAGTTCACCCAAAAATGAAAATCTACTCACTATTTACTCAAGTGGACCCAAAGCTTTATGAGATTCTGTTGAACACAAAAAAAGATGTTTTGAAGAAAGCTGAACACCTTTAACCACTAATGTCCATAGTAGGAAAACAAATACTATGAAAGTCAGTGGTTACGGGTTTTCCAGCTTTCTTCAAAATATATTTCTTATTCTTAACAAAAGAAAAATCGTTACTTAGAAGTCACTTCATTTTTGAGTGATTTTAGCCACTTTAAGCCACAGTTTTACACATGATTCAATTCAGTGTGCATTTATTTAATGTGAATCTCGTTCAGGTGGAGAGAATAAAA
GAGC/- GAGTGGAGGAGAAAGAAGGAATCCCACCTCAGCAACAGAGACTCATCTACAGTGGGAAACAGATGTAGGTCATTGTACACGTTGTGTTCCTGTACATCTTTGTAGATACATTTTTAACCCACAATCCACCTCTTCTTCCTCAGGAATGATGAGAAAACGGCAGCAGATTACAAAATCCAGGGCGGCTCTGTGCTGCATCTGGTTCTTGCTCTAAGAGGTGGACAAATCCACCAAAAACCCGACCGGCTTCTCCTAAATATGTAACCACCAGTCCTGCCTTGGTCAGCTTAGATATTCAGAAACAACAGATCAACTGTATGAACGACTGGTTGCCACCATATGCTTTGTTTGTTGGATCACTCATCACCTTCTTCCTGTTAATGCCACTCCCACTTCATTTGTTAAGAGTGTGACTGCTCTTTTTGTTAGGTTTACAAGGAATGTTTGAATTAAGGTAAAACTCATGTATCACTTTGACAATAAACATTGATGCCACCATT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
nedd8ihb1227/ihb1227HomozygousUnknown3 figures with image from Yu et al., 20202 figures with image from Yu et al., 2020
nedd8ihb1227/ihb1227Homozygous♀+/- ♂-/-Fig. 1 with image from Yu et al., 2020
nedd8ihb1227/ihb1227Homozygous♀+/- ♂+/-Fig. 1 with image from Yu et al., 2020
nedd8ihb1227/ihb1227 (AB)Homozygous♀+/- ♂-/-Fig. 8 with image from Yu et al., 2019Fig. 9 from Yu et al., 2019
nedd8ihb1227/+Heterozygous♀+/- ♂-/-Fig. 1 with image from Yu et al., 2020
nedd8ihb1227 (AB)Unknown♀+/- ♂-/-Fig. 7 from Yu et al., 2019Fig. 7 from Yu et al., 2019
arihb1225/ihb1225; nedd8ihb1227/ihb1227ComplexFig. 2 with image from Yu et al., 2020Fig. 4 from Yu et al., 2020
arihb1225/ihb1225; nedd8ihb1227/ihb1227Complex
arihb1225/+; nedd8ihb1227/ihb1227Complex
arihb1225/+; nedd8ihb1227/ihb1227Complex2 figures with image from Yu et al., 2020Fig. 4 from Yu et al., 2020
1 - 10 of 10
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 2 of 2
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.