Genomic Feature

ihb195

ID
ZDB-ALT-171106-3
Name
ihb195
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Zhan Yin Lab
Current Source
extinct
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 22
Variants
Variant Type
Small Deletion
Variant Location
Chr 22: 22716953 - 22716957 (GRCz11) (1) Details
Nucleotide change
GATAT/-
Variant Notes
Between 165bp and 169bp of the wild-type nr5a2 coding sequence, ATATC is  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TCTACCTTTAAACACACAGTCTTTTCCATAAAATCACATTATACACTAAATACATAACAAAAAAGTCCATAGGAATTTGATTTTAATAAAATAAAAACATTGTAATAATTTGGTAGGAAAAACTGAATTAAAACACATTAGATGAGTCTTTAACTAATTTGGAATCAAGTCCAGATTGTGACCCAAAAAATTTACAATACTAAAAATCATTAAAAGCAAAATTTTCATGAATGTGATGGTGCGGTTGTGCTAAATCTTACTTGGATTTGCTTCAAAATACCATTTGAATGGATGCACAACCTTCAAGGTCAACACAAGGTATTTAAAATAGTTCTCTTCTCTCTTCAAACACCAACAAATATTCTAAAACGTAAGCTTTGTTCTGTCCACAATTGTTTTTCTCCCTATCAGAACAATGCTTTTTTAGGGTGACCAGTTGAGAAGATAAAAACAGCTGATGTTACACACCTTACAGCTCTCACAGGTCAGCAACCCATAGT
GATAT/- CCGGACACCTTGTCTCCGCACACTGGACACATCTCATCCAAGTCTTCGTCGTAGGAGTAGTCCATCATTTTAAACTGTGGGGCTAAAAACATAAGAGTATGAATACAGTGAGTAACAATTTACATTACAGAACCTATTCAATTAATTAATTTATTTTTTGACAAAAAAAATAAAAAATGGTTTGGCTGTCATGTGTTATGAGGTTCGTTTTGAAAGATTAAGAAGCAGCTAAAAAAACAAGAACTGTTTGAATCTCCACAACGAAAAGACTAAACAAATTCAGAGCTTCAATGATTGAAAAAACATCATTTTAAAGCAAATATTTCAATTGTAACCATCTCTTCGGCTAACGTCTACGTGTAGCCTGCAGTTTTTGCAGAAATAAATAAAATACGAACCACCAGTTGTTCACCAAGTCTAGCCTTAAGAGTGAATTTTCTGTAAGAATATGCAGTTTTGGGTCTCTGGGAACTTGACGAAGCTACGAGTCGGGTGTGGAG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
nr5a2ihb195/ihb195Homozygous♀+/- ♂+/-3 figures from Zhai et al., 20172 figures from Zhai et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations