Genomic Feature
bns90
- ID
- ZDB-ALT-171002-11
- Name
- bns90
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Stainier Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 20: 20337166 - 20337173 (GRCz11) (1) Details
- Nucleotide change
- TCGAGGGA/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 8 bp deleted in Exon 6 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AGTTTGAGATTTAGTAAATAGTTATTACCATACTTGCATACATACATGAAAACGTTTATTCATAATTAGTAGAACCTTAAAATACACTAATAGCTTCTGCCACTAGGTGGTGCTAACAACCCAGTAAAGTTAAAACCGCAGGCTTTTGTGCTGACACTAAACGGGTTCTGCAGCATTGCTTTTATTCAAAGAGATGTAAACAAAAAGATTCAGGCTTGCAAAACATTTGTTGCCAAGCACAGATAACACTGTACATCCTGTACATCCAAACAAAACCCCAATGAAAATGAAAAAAGGAAAACTAAATTGTGCTAAATAATTTAAACCCTCAGAAAATGAAGAAAAAGAAAGGTTTGTGTGCCAATGTGTCGACCACCAAATTGGATTTTCTAATATGAGGGAGTCACATCTCTCTGCTAACCTTTCATCACAGTATGAGAACTTCATGTCCAGAGTGTGGCGGCTGAGGAAGGTCTTGCTGTCCAATGGCACCTCGATGT
TCGAGGGA/- TGAGGAATGGGCTCACAGATGAGCACAAGGTAAGTGACAGGGGGCTCTTTAAAGCCAGAGTCTTCTGAAGCCTCGCTGCCCTCGTGCACACGAACATGACCAGCGCAGTGAAGAACCTGAGAGAAGGAAAAATCTGCTTGTAAAAGTCTACTTTGAGCAAGTCAGCTACAATCAGTGTTCTTGCATCTCTTTCAAAGTAGAATTTAAGCACTTTATAAGTATGGCAAATGAGATATTTACAGAAATATACATAATTTATCACATCATAGCAGATGTTATTTGGTAAAGTATTCAACATTATAGTATTCTAAGGAACATTTTGATGGCATGTTTGCCGCAACATTGAATTACTGTAATTTACTCCTGTACATTTTTACTCACATCTTAATTGTGTCTTAATTTGAATTTCAAAAGGCACAGATGAAAAAAAAAAACTTTACAGGCACATAAGCAAACTCTAGAGTTTTAATTTTAGGCAAACGCAAAAAGATTTATTTTAT - Additional Sequence
- None
Fish
from 1 - 10 of 10
Show
Supplemental Information
- Genotyping protocol
- None
- Mandic, M., Flear, K., Qiu, P., Pan, Y.K., Perry, S.F., Gilmour, K.M. (2022) Aquatic surface respiration improves survival during hypoxia in zebrafish (Danio rerio) lacking hypoxia-inducible factor 1-α. Proceedings. Biological sciences. 289:20211863
- Mandic, M., Bailey, A., Perry, S.F. (2021) Hypoxia inducible factor 1-α is minimally involved in determining the time domains of the hypoxic ventilatory response in adult zebrafish (Danio rerio). Respiratory Physiology & Neurobiology. 294:103774
- Joyce, W., Perry, S.F. (2020) Hypoxia inducible factor-1α knockout does not impair acute thermal tolerance or heat hardening in zebrafish. Biology letters. 16:20200292
- Mandic, M., Best, C., Perry, S.F. (2020) Loss of hypoxia-inducible factor 1α affects hypoxia tolerance in larval and adult zebrafish (Danio rerio). Proceedings. Biological sciences. 287:20200798
- Ali, Z., Cui, D., Yang, Y., Tracey-White, D., Vazquez-Rodriguez, G., Moosajee, M., Ju, R., Li, X., Cao, Y., Jensen, L.D. (2019) Synchronized tissue-scale vasculogenesis and ubiquitous lateral sprouting underlie the unique architecture of the choriocapillaris. Developmental Biology. 457(2):206-214
- Ali, Z., Mukwaya, A., Biesemeier, A., Ntzouni, M., Ramsköld, D., Giatrellis, S., Mammadzada, P., Cao, R., Lennikov, A., Marass, M., Gerri, C., Hildesjö, C., Taylor, M., Deng, Q., Peebo, B., Del Peso, L., Kvanta, A., Sandberg, R., Schraermeyer, U., Andre, H., Steffensen, J.F., Lagali, N., Cao, Y., Kele, J., Jensen, L.D. (2019) Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization. Arteriosclerosis, Thrombosis, and Vascular Biology. 39:1402-1418
- El-Brolosy, M.A., Kontarakis, Z., Rossi, A., Kuenne, C., Günther, S., Fukuda, N., Kikhi, K., Boezio, G.L.M., Takacs, C.M., Lai, S.L., Fukuda, R., Gerri, C., Giraldez, A.J., Stainier, D.Y.R. (2019) Genetic compensation triggered by mutant mRNA degradation. Nature. 568(7751):193-197
- Marín-Juez, R., El-Sammak, H., Helker, C.S.M., Kamezaki, A., Mullapuli, S.T., Bibli, S.I., Foglia, M.J., Fleming, I., Poss, K.D., Stainier, D.Y.R. (2019) Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. Developmental Cell. 51:503-515.e4
- Gerri, C., Marass, M., Rossi, A., Stainier, D.Y.R. (2018) Hif-1α and Hif-2α regulate hemogenic endothelium and hematopoietic stem cell formation in zebrafish. Blood. 131(9):963-973
- Mandic, M., Tzaneva, V., Careau, V., Perry, S.F. (2018) Hif-1α paralogs play a role in the hypoxic ventilatory response of larval and adult zebrafish (Danio rerio). The Journal of experimental biology. 222(Pt 2):
1 - 10 of 11
Show