Genomic Feature

hg45

ID
ZDB-ALT-170809-2
Name
hg45
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 15
Variants
Variant Type
Delins
Variant Location
Chr 15: 31916842 - 31916848 (GRCz11) (1) Details
Nucleotide change
AACAACA/GAATTAAGTTAT
Variant Notes
Insertion 5 bp in exon 10, cDNA: 1066delAACAACAinsGAATTAAGTTAT, p. N356EfsX75
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp inserted / 7 bp deleted in Exon 10 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AAATAATGAACATGAAATCCATACAAAAACTAATATATCCAATTAAAAATTATAATTTTTTCACCTATTTAGTTGTTACCAAGAGTGAGTCCATTGAAGCTGATGATTTGGGAGAAAAAACTGTGTGCTCTCCAAATGAATCTCTTGATATAAGCAGTCTGTGGAAGCAGAGGGTTCCCAACGCTATCGAAGATGGGGATGTCCGCAACACTGTACAGAATGTTCTTGATGGTGCTGAGGACGTTTTGTCAATATTCTTCAGCAACAACACCTCAGCTTTGCGGAAAATCAAATCTAAAGAGAGGATCAGGAAGAGGATAACCAATTCCTCAGAGGATGTCAAATCAGTTTTTCTAACTTCAGAGCCAGAACAGAAATTAAAGGCTGATACTGAAACAAAAAGCCCCAGCAAAAATGACGATTCCATTGAATGGACCCCACTAAGTTTATCAGAGACCATACTGACCGAAGGTTGTTCAAGTACTTCTTTGGTAGACAAT
AACAACA/GAATTAAGTTAT CGGTGGCACCCAGTGAAACTAACGATGGTGCTATTTTCAAATTCACTTCAGAAAGTAGCCAGACTTGTCCACAGAGTGTTAGACTCGAGTCTTCCCCTGAAGGAACTCAGTGTCAGAAGATTTTGTTGGACAAGTCGTCTGCTTTCATGCTTAACAAAAAGCCCAGGAAATTTGTGTATCAAGTGTCAAGTTCAGAAATGTCAACCACTTTAACTGGAAGCAAAGCAGATCTGCCAAAATGTTTGGACCAAACACTTAAAGGTAAGAATATTTTTCTATTAAGTTATCGAACAAACATTGTGTGTGCAAGTCCTTGAACAGGAATTTTATTTCACTTTTGACAGAGGGTCCTTCGGTGGAGGAGCTATCTGTGTGCCTTAATAAATCCAGTTTCACTAATGAAAACCCAATTGGAGATCAAACACAGCCACAAGCTGTTGAACAGTTATCTTCAGAACATCTTGACCATGGCTTGGATATGACACAGCTTTCCAAAGCGT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
brca2hg45/hg45Homozygous♀+/- ♂+/-3 figures with image from Ramanagoudr-Bhojappa et al., 2018
brca2hg45/+ (AB)HeterozygousUnknown
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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