Genomic Feature

um80

ID
ZDB-ALT-160721-13
Name
um80
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with zinc finger nuclease
Lab of Origin
Lawson Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 6
Variants
Variant Type
Delins
Variant Location
Chr 6: 9439543 - 9439619 (GRCz11) (1) Details
Nucleotide change
TCAGAATAAGCCCCGCTCTGAGTTTGTTGTGGCTGAGTATGATAAATACTTCGAGGTGAGTGTTATTATTTGAGGTC/GAATAAATGTTTCTTTTCTTTTAAA
Variant Notes
77 nt deletion/25 nt insertion. Deletes exon 8 splice donor site.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
25 bp inserted / 77 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTTTCGGCAGAATCTAATAGTATATTGTGGTACAGAAATTCAATAAACAAATGTAAATTAAAACTCTATAGTCTTCATTGTATAATTAAACACTGATAATCTTTGTTAAAGTGAAATGTCATCTATCCAGATGGTTGAAATTCACTTAATCCTTCGATGTGACATTTTTAACGCAAAAATGAAAATTTCTGCACCATTTACGAACACTAAAGTTGTTCTAAACTTCTTTTTGTTAAACATAAAACAAGATAAGCAGCCACTGCTATACATAGTACTAACAAAATGTACAATGGAAGTCAATGGCTGTTTTTCCCCAACATTCTTCAGTATGTCTTCCTTTGTGTTCAACAGAAGTAACAAGTTGGGGATTTGTAAATCATGACAGAATTTTAGTTTTTTTTTTTTTGTGAATTCTTCCTTTAGTGCTGTAGTAAACGTCATCTGTTTGTTTGTCTTCTTGTTCTCCAGGAGAGAAGATTACACATGTATGTCATCTACTG
TCAGAATAAGCCCCGCTCTGAGTTTGTTGTGGCTGAGTATGATAAATACTTCGAGGTGAGTGTTATTATTTGAGGTC/GAATAAATGTTTCTTTTCTTTTAAA TCTTTTGGAATAAATGGCTCTGTTTGTTGAAGATGTTGCTGTTTTTTTTTGTTTCGTTAGGGGGTGCAACAGGAGATCAACTCCAGACTTGCCATCAGTGATTACCTGATCAAGCCCATTCAGAGGATCACCAAATACCAGCTCTTGCTCAAGGTATCAGCCATACATTAACCACTACAGTACATATCATGTTAAACAGATTCCAGCAAAGACATAGAAGGTATAAATTAAGACAAATATATTTATTTTATGCAATTATATTCAGGGGTGCACAGAACGTTTTGGTCTGGATTGGTAAAGGAGTACTGAAGTCATATTCATATAAAATTGGCGATTAAAATATACTTATAAATTGCACAAATGTGACAAGTATTTTAATACCTTTTGAAATCTTGTATTTTAAATATGTGATTTGCTTATATTTCTGTATGTCAGATTTCTGTTTGTGGTATGAAATGCTCTTGCGCTTTGGTTGGGGCGTTTCAGTAGGCATTGAAATT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
kalrnbum80/um80Homozygous♀+/- ♂+/-2 figures with image from Kok et al., 2015
kalrnbum80/um80; s843TgComplexFig. 2 with image from Kok et al., 2015
kalrnbum80/um80; y1TgComplexFig. 2 with image from Kok et al., 2015
1 - 3 of 3
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.