Genomic Feature
sa42
- ID
- ZDB-ALT-080806-1
- Name
- sa42
- Synonyms
-
- sa0042 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stemple Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
Comment | Citation |
---|---|
The Ybx1 sa42 mutant protein is expressed in embryos at the permissive ... | Nagorska et al., 2023 |
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 8: 47149266 (GRCz11) (1) Details
- Nucleotide change
- C/A
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- Flanking Sequence
-
TTTCCACATATTCAAGAGTCAAGATATTCAGCCACCCCTATCGAAAAGTCAATTAAAGTCAAGGCAGGGGTGTCAAACTCCATACAGGACTGCAACCCACCAGGAACTGTTTAGTTTTAACCCTGCTTCAACACACTTGCATGTATGTATTAAACAAGCTTGAAGGACTCAGTTCTATCATGTGTGTTTAATTAGCGTTGGAACTAAACTGAGCAGAGCTGCGGCCCTCCAGGATTGAGTTTGACATCTGTGTTATGATTTTGTGCTGTTTAATGCATTTTAATTTAAAGCCCAAAGCTTGACTAGTACTACATAAAAGCAAGAAAGAAATAATACATTTCTCAATAAATAATTTGTCCTTGACTTTTATTAAACAAGTCCTCAAGCCTAATATTTCTAACTGTGTGGTGAAACTTTTGTTTGAGTCAAACTAAGCTACGACTAAAAGCTCACCTTCTCCCCTTCTACCACGTCGAACTCCACAGTCTCTCCGTCCCCAA
C/A GCTACGGAGATATTTCCTGGGGTTGTTCTTTTTAATGGCGGTCTAGACAGAAAACAAAGGCAATCAGAAAAAAATACATCTACCCCAACACAAATATAAAAAGAAAACTGGAGAAAATAATCACCTGATGCACAAAGACATCTTCCTTTGTGTCATTCCTGCAAAAATAAAGAAAGTGAAAACATTAAAAGCCGAGGACTTAGTGTAAACAAGCATGTTCAGTTGAGCAGCAAGTTAAATATTTGGATAAATATTAGCATGCTAGTGCATGTCAGGTCCTGCTTTGTAAGCAAAGCTCTAATAGGATTGTGGATGTTCCCTGACCCACATATTATATTAGATAGCTCTTCAGAAGCTGAAAGTTATTTACCTGTTGATGAAACCGTAGCCGTTCCTTACATTGAACCATTTCACTGTCCCCAAAACTTTTGTTGCTGCAAAGATGAGGAAAAGGGCTGTTAAAAACAGATTTAAGACTCAAAACAAATCTGTATTTTAAA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
ybx1sa42/sa42 | Homozygous | ♀-/- ♂-/- | Fig. 8 ![]() | ||
ybx1sa42/sa42 (TU) | Homozygous | ♀-/- ♂-/- | 3 figures ![]() | Fig. 5. ![]() | |
ybx1sa42/+ | Heterozygous | ♀-/- ♂+/+ | 4 figures ![]() | 2 figures ![]() | |
ybx1sa42/+ | Heterozygous | ♀+/+ ♂-/- | 2 figures ![]() | ||
ybx1sa42/+ (AB) | Heterozygous | Unknown | |||
ybx1sa42/+ (TU) | Heterozygous | ♀+/+ ♂-/- | |||
ybx1sa42 | Unknown | Unknown | |||
ybx1sa42/+; sg4Tg | Complex | 3 figures ![]() | Fig. 4 ![]() | ||
ybx1sa42/+; sg4Tg | Complex | Fig. 3 ![]() | Fig. 4 ![]() | ||
ybx1sa42/+; sg6Tg | Complex | Fig. 3 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Nagorska, A., Zaucker, A., Lambert, F., Inman, A., Toral-Perez, S., Gorodkin, J., Wan, Y., Smutny, M., Sampath, K. (2023) Translational control of furina by an RNA regulon is important for left-right patterning, heart morphogenesis and cardiac valve function. Development (Cambridge, England). 150(23):
- Sun, J., Yan, L., Shen, W., Meng, A. (2018) Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation. Development (Cambridge, England). 145(19):
- Zaucker, A., Nagorska, A., Kumari, P., Hecker, N., Wang, Y., Huang, S., Cooper, L., Sivashanmugam, L., VijayKumar, S., Brosens, J., Gorodkin, J., Sampath, K. (2017) Translational co-regulation of a ligand and inhibitor by a conserved RNA element. Nucleic acids research. 46(1):104-119
- Kumari, P., Gilligan, P.C., Lim, S., Tran, L.D., Winkler, S., Philp, R., and Sampath, K. (2013) An essential role for maternal control of Nodal signaling. eLIFE. 2:e00683
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