Genomic Feature

sa42

ID
ZDB-ALT-080806-1
Name
sa42
Synonyms
  • sa0042 (1)
Affected Genomic Region
Construct
None
Type
Allele with one point mutation (1)
Protocol
adult males treated with ENU
Lab of Origin
Stemple Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
Comment Citation
The Ybx1 sa42 mutant protein is expressed in embryos at the permissive  ... Nagorska et al., 2023
Genome Browser
Genome Build: GRCz11Chromosome: 8
Variants
Variant Type
Point Mutation
Variant Location
Chr 8: 47149266 (GRCz11) (1) Details
Nucleotide change
C/A
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
G>T (1)
Transcript Consequence
Missense (1)
Protein Consequence
None
Sequences
Flanking Sequence
TTTCCACATATTCAAGAGTCAAGATATTCAGCCACCCCTATCGAAAAGTCAATTAAAGTCAAGGCAGGGGTGTCAAACTCCATACAGGACTGCAACCCACCAGGAACTGTTTAGTTTTAACCCTGCTTCAACACACTTGCATGTATGTATTAAACAAGCTTGAAGGACTCAGTTCTATCATGTGTGTTTAATTAGCGTTGGAACTAAACTGAGCAGAGCTGCGGCCCTCCAGGATTGAGTTTGACATCTGTGTTATGATTTTGTGCTGTTTAATGCATTTTAATTTAAAGCCCAAAGCTTGACTAGTACTACATAAAAGCAAGAAAGAAATAATACATTTCTCAATAAATAATTTGTCCTTGACTTTTATTAAACAAGTCCTCAAGCCTAATATTTCTAACTGTGTGGTGAAACTTTTGTTTGAGTCAAACTAAGCTACGACTAAAAGCTCACCTTCTCCCCTTCTACCACGTCGAACTCCACAGTCTCTCCGTCCCCAA
C/A GCTACGGAGATATTTCCTGGGGTTGTTCTTTTTAATGGCGGTCTAGACAGAAAACAAAGGCAATCAGAAAAAAATACATCTACCCCAACACAAATATAAAAAGAAAACTGGAGAAAATAATCACCTGATGCACAAAGACATCTTCCTTTGTGTCATTCCTGCAAAAATAAAGAAAGTGAAAACATTAAAAGCCGAGGACTTAGTGTAAACAAGCATGTTCAGTTGAGCAGCAAGTTAAATATTTGGATAAATATTAGCATGCTAGTGCATGTCAGGTCCTGCTTTGTAAGCAAAGCTCTAATAGGATTGTGGATGTTCCCTGACCCACATATTATATTAGATAGCTCTTCAGAAGCTGAAAGTTATTTACCTGTTGATGAAACCGTAGCCGTTCCTTACATTGAACCATTTCACTGTCCCCAAAACTTTTGTTGCTGCAAAGATGAGGAAAAGGGCTGTTAAAAACAGATTTAAGACTCAAAACAAATCTGTATTTTAAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
ybx1sa42/sa42Homozygous♀-/- ♂-/-Fig. 8 with image from Kumari et al., 2013
ybx1sa42/sa42 (TU)Homozygous♀-/- ♂-/-3 figures with image from Nagorska et al., 2023Fig. 5. with image from Nagorska et al., 2023
ybx1sa42/+Heterozygous♀-/- ♂+/+4 figures with image from Kumari et al., 20132 figures with image from Kumari et al., 2013
ybx1sa42/+Heterozygous♀+/+ ♂-/-2 figures with image from Kumari et al., 2013
ybx1sa42/+ (AB)HeterozygousUnknown
ybx1sa42/+ (TU)Heterozygous♀+/+ ♂-/-
ybx1sa42UnknownUnknown
ybx1sa42/+; sg4TgComplex3 figures with image from Kumari et al., 2013Fig. 4 with image from Kumari et al., 2013
ybx1sa42/+; sg4TgComplexFig. 3 with image from Kumari et al., 2013Fig. 4 with image from Kumari et al., 2013
ybx1sa42/+; sg6TgComplexFig. 3 with image from Kumari et al., 2013
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Supplemental Information
Genotyping protocol
None
Citations