Genomic Feature
j120
- ID
- ZDB-ALT-080515-1
- Name
- j120
- Synonyms
-
- Nermal
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- ENU
- Lab of Origin
- Stephen L. Johnson Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 6: 15623236 (GRCz11) (1) Details
- Nucleotide change
- T/A
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- None
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
ATAATTTTCTCACCCTTCACTTGTTTTAAAACTTTTTAACTTTCTTTTGTTAAACACTAAAGAAGACATTTTTTTAAATGTCATGACATGATACTGCACCATATGTTGGCATGCTAACCACTAGGCTATTGCACTGAATAAAAGAAGAGATTTTGAACAAAGATAGAAACATGTAATCATTTGTTTTTCCTACCATGGAAGTCAATAATTAGAGGTTTTCAGCTTTCTTCAACATATCTTATTTCCTTTTTAATATAGTTCACATCATGCTGATAAAGCGCCTTAATCAGTGATGATCATACCGGTGGTGCTCCCTGCTGAATGTTCTCCTGAGATGAAGCTCGACTGCGGCGCCGAGGAGGAAGCTGGTAAACAGGATAGCGGTACATATCCTCTTCCTCTGAAGTGTCCAGGTAGATCTGACGCGGAGCCATTGAGGAATTGATTTTAGAGAGAGAACGAGCACGTACCATTCTGTTCTCAGAGTATAGGCCATCATC
T/A GCAATAATCAAGAAGGTGACAAATGAGTTTATCTTAATACTAAAATCAAGATCTCTCTTGACTGTTTAAATAAAACCTGAAGTTAATAATCCTGGAATCATGAATAATAAAAAAATAAATAAAAAATGAAGAAACCACTTCCAAGTTATTATAGTTCTCTAATTTTAAATTAAAATATACAGTTGACGAACTCAACTGACATTTTTCACCGTATTTCCTAATATATTTTCTTCTGGAGAATGTCTTATTTCTTTTTGTTTGTCTGGAATTATATATACCTGTATAATATACATCAATATTATTAGCCCTCTTAAGAATTTTGTTTTTTTGATTGGCTACAGAACAAACCACTGTTGTCCAATGACTTGACAAATTAACCTAACTTGCCTAGTTTACCTGATTAACCTAGTAGGCCTTTTTAAATTGCACTTGGTGGTAAAAAAAATAAATAAATAAAAATCTTTTAATATATATATATCAAATATGAAATGTAAGACCAA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
mlphaj120/j120 | Homozygous | ♀+/- ♂+/- | 2 figures ![]() | Fig. 4 ![]() | |
mlphaj120/j120 | Homozygous | Unknown | Fig. 5 from Allen et al., 2019 | ||
mlphaj120/+ (AB) | Heterozygous | Unknown | |||
mlphaj120/+ (SJA) | Heterozygous | Unknown | |||
mlphaj120/j120; j900Tg | Complex | 2 figures from Allen et al., 2019 | 2 figures from Allen et al., 2019 | ||
mlphaj120/j120; j972Tg | Complex | Fig. 5 from Allen et al., 2019 | |||
mlphaj120/+; cj3Tg | Complex | ||||
mlphaj120/j120; gabrr1j247/j247; j900Tg | Complex | Fig. 4 from Allen et al., 2019 | |||
mlphaj120/j120; gabrr1j247/+; j900Tg | Complex | 2 figures from Allen et al., 2019 | Fig. 4 from Allen et al., 2019 | ||
mlphaj120/j120; gabrr1j248/j248; j900Tg | Complex | Fig. 4 from Allen et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- Jang, H.S., Chen, Y., Ge, J., Wilkening, A.N., Hou, Y., Lee, H.J., Choi, Y.R., Lowdon, R.F., Xing, X., Li, D., Kaufman, C.K., Johnson, S.L., Wang, T. (2021) Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish. Genome biology. 22:282
- Allen, J.R., Skeath, J.B., Johnson, S.L. (2019) GABA-A receptor and mitochondrial TSPO signaling act in parallel to regulate melanocyte stem cell quiescence in larval zebrafish. Pigment cell & melanoma research. 33(3):416-425
- Allen, J.R., Skeath, J.B., Johnson, S.L. (2019) Maintenance of Melanocyte Stem Cell Quiescence by GABA-A Signaling in Larval Zebrafish. Genetics. 213(2):555-566
- O'Reilly-Pol, T., and Johnson, S.L. (2013) Kit signaling is involved in melanocyte stem cell fate decisions in zebrafish embryos. Development (Cambridge, England). 140(5):996-1002
- Tryon, R.C., Higdon, C.W., and Johnson, S.L. (2011) Lineage relationship of direct-developing melanocytes and melanocyte stem cells in the zebrafish. PLoS One. 6(6):e21010
- Tu, S., and Johnson, S.L. (2010) Clonal analyses reveal roles of organ founding stem cells, melanocyte stem cells and melanoblasts in establishment, growth and regeneration of the adult zebrafish fin. Development (Cambridge, England). 137(23):3931-3939
- Hultman, K.A., Budi, E.H., Teasley, D.C., Gottlieb, A.Y., Parichy, D.M., and Johnson, S.L. (2009) Defects in ErbB-dependent establishment of adult melanocyte stem cells reveal independent origins for embryonic and regeneration melanocytes. PLoS Genetics. 5(7):e1000544
- O'Reilly-Pol, T., and Johnson, S.L. (2008) Neocuproine ablates melanocytes in adult zebrafish. Zebrafish. 5(4):257-264
- Sheets, L., Ransom, D.G., Mellgren, E.M., Johnson, S.L., and Schnapp, B.J. (2007) Zebrafish Melanophilin Facilitates Melanosome Dispersion by Regulating Dynein. Current biology : CB. 17(20):1721-1734
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