Transcript

hpda-202

ID

ZDB-TSCRIPT-160112-374

Name

hpda-202 Nomenclature History

Previous Names

hpda-002

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

hpda (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000173162 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000173162.2|gene_biotype:protein_coding|ENSDARG00000018351.10 transcript_biotype:nonsense_mediated_decay cdna chromosome:GRCz11:5:2815026:2834326:1
CTTCTGGTCGTCACACACACCGACAGCAGCAGCGGAGACA
TGACTTCTTACACAGATAAAGGAGAGAAGCCCGAGAGAGG
AAAGTTTCTAAACTTTCACCATATCAAATTCTGGGTGGGA
AACGCCAAACAGGCTGCGGTGTTTTACTGTGATAAGTTTG
GATTTGAGCCGCTGGCGTATAAAGGTCTGGAGACGGGCAG
CAGAGAAGTGGTGTCTCATGCTGTCAAACAGGATAAGATT
ATATTTGTCTTTGAATCTGCTCTCAACCCTGGAAATGAAG
AAATGGGGGAGCATCTGATAAAACATGGAGACGGAGTCAA
AGATGTGGCGTTTCTGGTGGAGGACTGTGACTTTCTAGTC
AAGCGCATGTGTTTGGACTGTGGGGGAAACCGGAGCACCC
AGAGGAAACCCGCACCAACATGAGGAGAACATGCAAACTC
CACACAGACATGCCAATTGACCCAGCCGGAACTCGAACCA
GCAACCTTCTTGTTGTGAAGCCACATTGCTAACCACTGAG
CCAACGTGTGGCCCGTGAAAGCTAAAGAGCGTGGTGCGGC
GGTGCTGAAAGAGCCATGGGTGGAGCAGGACGCTGGCGGA
AAAGTCAAATACGCCATAGTTCAGACTTATGGAGACACGA
CACACACGTTTGTGGAGTACTTGGGGCCGTATAAAGGCCT
GTTTCTGCCAGGATACAAAGAGCCGCTGTTCAGAGACCCT
CTCTTACCAAAACTG

OTTDART00000062430 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000062430|OTTDARG00000043125| hpda|OTTDARP00000048796 hpda-002 LG_ CU929320.13 Danio rerio protein_coding KNOWN, 735 bp
CTTCTGGTCGTCACACACACCGACAGCAGCAGCGGAGACA
TGACTTCTTACACAGATAAAGGAGAGAAGCCCGAGAGAGG
AAAGTTTCTAAACTTTCACCATATCAAATTCTGGGTGGGA
AACGCCAAACAGGCTGCGGTGTTTTACTGTGATAAGTTTG
GATTTGAGCCGCTGGCGTATAAAGGTCTGGAGACGGGCAG
CAGAGAAGTGGTGTCTCATGCTGTCAAACAGGATAAGATT
ATATTTGTCTTTGAATCTGCTCTCAACCCTGGAAATGAAG
AAATGGGGGAGCATCTGATAAAACATGGAGACGGAGTCAA
AGATGTGGCGTTTCTGGTGGAGGACTGTGACTTTCTAGTC
AAGCGCATGTGTTTGGACTGTGGGGGAAACCGGAGCACCC
AGAGGAAACCCGCACCAACATGAGGAGAACATGCAAACTC
CACACAGACATGCCAATTGACCCAGCCGGAACTCGAACCA
GCAACCTTCTTGTTGTGAAGCCACATTGCTAACCACTGAG
CCAACGTGTGGCCCGTGAAAGCTAAAGAGCGTGGTGCGGC
GGTGCTGAAAGAGCCATGGGTGGAGCAGGACGCTGGCGGA
AAAGTCAAATACGCCATAGTTCAGACTTATGGAGACACGA
CACACACGTTTGTGGAGTACTTGGGGCCGTATAAAGGCCT
GTTTCTGCCAGGATACAAAGAGCCGCTGTTCAGAGACCCT
CTCTTACCAAAACTG

Related Transcripts

Transcripts related to hpda

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
aberrant processed transcript	hpda-202	Ensembl		735 nt
mRNA	hpda-201 (1) Ensembl	Ensembl		1,787 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations