Transcript

clip2-203

ID

ZDB-TSCRIPT-110325-686

Name

clip2-203 Nomenclature History

Previous Names

clip2-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

clip2 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000149447 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000149447.2|gene_biotype:protein_coding|ENSDARG00000059596.8 transcript_biotype:nonsense_mediated_decay cdna chromosome:GRCz11:5:59436500:59479829:1
GCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGG
TGTGGAGTGGAGCTGGACGAGCCGTTAGGGAAAAACGATG
GAGCTGTTGCTGGAACCAGATATTTCCAGTGCCCACCCAA
GTTTGGCCTCTTTGCTCCAATCCACAAGGTGATTCGCATC
GGCTTCCCGTCCACCAGTCCAGCTAAAGCTAAGAAGAGCA
AGCGTATGGCGATGGGTGTGTCGTCTCTGGCCCACAGCCC
CTCCAGTTCCTCCATCAGCTCTGTCAGCTCTGTGGCGTCC
AGCGTTGGAGGCCGTCCCAGCCGCACAGGGCCGAGTGGAG
GATGAAGGAGCAGAAACTACAAGATGACATCAAAACCCTG
AGAGAGAAACTTTTGCTGCTGGGTCGTGAGAGGTTGTCTC
CAGACCATCGCCGGTACTCTATGATGGACCCGTCTGCCTC
AGACACAGAGGTGGCTCGTCTTCGTCAAAGGCTGCTGAAC
ACTGAAGATGCTCTGAGGAATGCTCTGGAACACAACCAAC
ACGTGGACCAGCTAGTGCAGGCCATGCGCACACGTCCAGA
CAAAAACCAGGCACATGCTAGTGCAAACTCTGCAAATGGA
ATCCATCAAGAAGACCCTTCATTCACACAAGAGGAAGAAC
ACTGATGAGGGCTAAAACAGTTCAGAGGAGTATTGGGAAC
GAAGAAGCCAATTTGATGCCTAGACCTTTGGACTAATGCT
TCACTGGACATCTTATGTTCTGTTTACAGTTAACACCAAA
ACAACGAACTTTATAGATGAGCAAATGAAAACACCAATAT
CTAAAATGATCGGAGATGCTAGAAAAAAAA

OTTDART00000050185 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000050185|OTTDARG00000018699|ZDB-GENE-100727-3 clip2|OTTDARP00000039390 clip2-003 LG_ BX901917.9 Danio rerio protein_coding KNOWN, 830 bp
GCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGG
TGTGGAGTGGAGCTGGACGAGCCGTTAGGGAAAAACGATG
GAGCTGTTGCTGGAACCAGATATTTCCAGTGCCCACCCAA
GTTTGGCCTCTTTGCTCCAATCCACAAGGTGATTCGCATC
GGCTTCCCGTCCACCAGTCCAGCTAAAGCTAAGAAGAGCA
AGCGTATGGCGATGGGTGTGTCGTCTCTGGCCCACAGCCC
CTCCAGTTCCTCCATCAGCTCTGTCAGCTCTGTGGCGTCC
AGCGTTGGAGGCCGTCCCAGCCGCACAGGGCCGAGTGGAG
GATGAAGGAGCAGAAACTACAAGATGACATCAAAACCCTG
AGAGAGAAACTTTTGCTGCTGGGTCGTGAGAGGTTGTCTC
CAGACCATCGCCGGTACTCTATGATGGACCCGTCTGCCTC
AGACACAGAGGTGGCTCGTCTTCGTCAAAGGCTGCTGAAC
ACTGAAGATGCTCTGAGGAATGCTCTGGAACACAACCAAC
ACGTGGACCAGCTAGTGCAGGCCATGCGCACACGTCCAGA
CAAAAACCAGGCACATGCTAGTGCAAACTCTGCAAATGGA
ATCCATCAAGAAGACCCTTCATTCACACAAGAGGAAGAAC
ACTGATGAGGGCTAAAACAGTTCAGAGGAGTATTGGGAAC
GAAGAAGCCAATTTGATGCCTAGACCTTTGGACTAATGCT
TCACTGGACATCTTATGTTCTGTTTACAGTTAACACCAAA
ACAACGAACTTTATAGATGAGCAAATGAAAACACCAATAT
CTAAAATGATCGGAGATGCTAGAAAAAAAA

Related Transcripts

Transcripts related to clip2

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	clip2-203	Ensembl	830 nt
mRNA	clip2-201 (1) Ensembl	Ensembl	3,948 nt	Select Tool ZFIN BLAST
mRNA	clip2-202 (1) Ensembl	Ensembl	3,843 nt	Select Tool ZFIN BLAST
mRNA	clip2-204 (1) Ensembl	Ensembl	624 nt	Select Tool ZFIN BLAST
mRNA	clip2-205 (1) Ensembl	Ensembl	3,747 nt	Select Tool ZFIN BLAST
mRNA	clip2-206 (1) Ensembl	Ensembl	4,032 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations