Transcript

prpf38b-202

ID

ZDB-TSCRIPT-090929-7670

Name

prpf38b-202 Nomenclature History

Previous Names

prpf38b-002

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

prpf38b (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000131872 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000131872.2|gene_biotype:protein_coding|ENSDARG00000053101.6 transcript_biotype:nonsense_mediated_decay gene_symbol:prpf38b cdna chromosome:GRCz11:2:45656236:45663914:-1
GTCCCCACAATTCGGTGTAACAGAGCGCTTCGCGTGCGTC
TGCCTCCAACCCAGAGAATAAGAAACAAAACGACCTGAAA
ACACACTTGAATGAATTAAGAGACGTCGGTCCGCTTCTCG
CGCACCTCGTCGGACGCGTTCCTTCGCGATATTCGTTAAG
GTTAACGACTATTTTTGTCCGTTTTCTCATTTAATGGCGT
TGTGAAGGAACTGCCATGGCGGGTAGTCAGCAGCAACAAC
AGCAGCAGGCCGTGAGCAAACCGACCGGCGGGAAACACGG
CAATAATTTGCCATTATGGGGCAACGAGAAGACTATGAAC
CTCAACCCTATGATTCTGACAAACGTGCTTTCTTCACCCT
ACTTCAAGGTCCAGCTGTACGAGCTCAAGACGTACCACGA
GGTGGTGGACGAGATTTACTTCAAGGTCAACCATGTGGAG
CCATGGGAAAAAGGCAGCAGGAAGACAGCTGGGCAGACGG
GAATGTGCGGAGGGGTTCGAGGAGTCGGGACAGGTGGAAT
CGTGTCCACGGCATTTTGTCTGCTGTATAAACTGTTCACA
CTAAAGCTGACACGGAAACAAGTGATGGGTCTTATCACTC
ACTCCGATTCACCCTATATCAGGGCATTGGGCTTCATGTA
CATCAGGTATACTCAACCTCCTCCTGACTTGGTTGACTGG
TATGATGAGTTCCTTGACGACGAGGAGGTATGTCGCCACG
GGAGCTGGACGTGAAAGCTGGAGGAGGGTGTGTTATGACG
GTTGGAGAGATGCTTCGCTCCTTTCTGACCAAGCTGGAGT
GGTTCTCAACATTGTTTCCAAGAATACCTGTACCTGTGCA
GAAGGCAATTGATCAGCACATGAAGAGCCGACCGCGTAAA
CCCCCACAAAAAGATGAGCAGGAAGAGGAGGAGGAAGAGG
CCACAGCAGCACCAGCAGCCGATACAGGCAGGCATGGAGA
TAGGCGCCGTTCCAGGACACCTAGGAGAAGTCCAAGTCCC
AGGAAATCCCAGAATCGCTCCCGGAGTCGCAGCCATCACA
GAGAAAGGCATGGTGCTAGCTTTGATCATGAACTGGAGAG
AGAACGAGACCGTCAGCGCAAGGAACGGGAAGGAAAGGAC
CGGGACAGAGATAGAGACAGGGACCGAGAGAGAGACAGGG
AGAGAGACAGAGATAGACGACGTTCCAGAACTCCAGACCG
AAACGCAGAACGCCGGCGGAGCAGAAGCA

OTTDART00000024886 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000024886|OTTDARG00000020031|ZDB-GENE-040426-2878 prpf38b|OTTDARP00000027044 prpf38b-002 LG_ CR450720.5 Danio rerio protein_coding KNOWN, 1229 bp
GTCCCCACAATTCGGTGTAACAGAGCGCTTCGCGTGCGTC
TGCCTCCAACCCAGAGAATAAGAAACAAAACGACCTGAAA
ACACACTTGAATGAATTAAGAGACGTCGGTCCGCTTCTCG
CGCACCTCGTCGGACGCGTTCCTTCGCGATATTCGTTAAG
GTTAACGACTATTTTTGTCCGTTTTCTCATTTAATGGCGT
TGTGAAGGAACTGCCATGGCGGGTAGTCAGCAGCAACAAC
AGCAGCAGGCCGTGAGCAAACCGACCGGCGGGAAACACGG
CAATAATTTGCCATTATGGGGCAACGAGAAGACTATGAAC
CTCAACCCTATGATTCTGACAAACGTGCTTTCTTCACCCT
ACTTCAAGGTCCAGCTGTACGAGCTCAAGACGTACCACGA
GGTGGTGGACGAGATTTACTTCAAGGTCAACCATGTGGAG
CCATGGGAAAAAGGCAGCAGGAAGACAGCTGGGCAGACGG
GAATGTGCGGAGGGGTTCGAGGAGTCGGGACAGGTGGAAT
CGTGTCCACGGCATTTTGTCTGCTGTATAAACTGTTCACA
CTAAAGCTGACACGGAAACAAGTGATGGGTCTTATCACTC
ACTCCGATTCACCCTATATCAGGGCATTGGGCTTCATGTA
CATCAGGTATACTCAACCTCCTCCTGACTTGGTTGACTGG
TATGATGAGTTCCTTGACGACGAGGAGGTATGTCGCCACG
GGAGCTGGACGTGAAAGCTGGAGGAGGGTGTGTTATGACG
GTTGGAGAGATGCTTCGCTCCTTTCTGACCAAGCTGGAGT
GGTTCTCAACATTGTTTCCAAGAATACCTGTACCTGTGCA
GAAGGCAATTGATCAGCACATGAAGAGCCGACCGCGTAAA
CCCCCACAAAAAGATGAGCAGGAAGAGGAGGAGGAAGAGG
CCACAGCAGCACCAGCAGCCGATACAGGCAGGCATGGAGA
TAGGCGCCGTTCCAGGACACCTAGGAGAAGTCCAAGTCCC
AGGAAATCCCAGAATCGCTCCCGGAGTCGCAGCCATCACA
GAGAAAGGCATGGTGCTAGCTTTGATCATGAACTGGAGAG
AGAACGAGACCGTCAGCGCAAGGAACGGGAAGGAAAGGAC
CGGGACAGAGATAGAGACAGGGACCGAGAGAGAGACAGGG
AGAGAGACAGAGATAGACGACGTTCCAGAACTCCAGACCG
AAACGCAGAACGCCGGCGGAGCAGAAGCA

Related Transcripts

Transcripts related to prpf38b

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	prpf38b-202	Ensembl	1,229 nt
mRNA	prpf38b-201 (1) Ensembl	Ensembl	2,188 nt	Select Tool ZFIN BLAST
ncRNA	prpf38b-003 (1) Ensembl	Ensembl	777 nt	Select Tool ZFIN BLAST
ncRNA	prpf38b-004 (1) Ensembl	Ensembl	777 nt	Select Tool ZFIN BLAST
ncRNA	prpf38b-005 (1) Ensembl	Ensembl	731 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations