Transcript

exosc5-201

ID

ZDB-TSCRIPT-090929-3954

Name

exosc5-201 Nomenclature History

Previous Names

exosc5-001

Transcript Type

mRNA

Annotation Status

Annotation Method

Ensembl

Associated With Genes

exosc5 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000059352 (1) [ Show ]

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>tpe|ENSDART00000059352.6|gene_biotype:protein_coding|ENSDARG00000040557.8 transcript_biotype:protein_coding cdna chromosome:GRCz11:18:36060295:36066087:-1
GAGCAGATTGTGCATGAGGACCGAGATGGAGCTGGAGCGA
AGTTGTCCAGTTTTAAGAGAATATGGAAGTGAACAGAGTT
TGTTATCAAGACCTGACGGGTCGTCCACGTTTGTACAAGG
GGACACGAGTATCCTGGCTGGAGTTTATGGACCAGCTGAG
GTTAAAGTCAGCAAGGAAATATATGATCGGGCAACTGTAG
AGGTCCTTATACAGCCCAAAATGGGGCTTCCAAGTGTCCG
CGAGCGAGCGAGAGAGCAGTGTGTCCGTGAGACTTGTGAA
GCTGCCCTTCTGTTGACCCTTCATCCACGCTCTTCTCTCA
CGGTCATCCTGCAGGTCGTCCACGATGATGGATCTCTGCT
GTCGTGTTGTCTAAACGCTGCCTGTATGGCTCTAATGGAT
GCCGGGCTGCCCATGAGCCGCCTTTTCTGTAGTGTGACCT
GCGCCATTAGCAAAGAGGGCCAGATAATCACTGACCCCAC
AGCTCGACAGGAAAAGGAAAGTCGAGCGCTGTTAACATTT
GCCATTGATAGCAATGAGCGCAATGTTTTGATGTCATCGA
CTACAGGCTCTTTTTCAGTGCAGGAGCTCCAGCAGTGCAT
CGCTATCAGTCAGAAGGCCTCGGAGCAAATCTTCCAGTTT
TATAGGGATTCTGTCAAGCGGCGATATTCAAAGATGCAAT
AAAATATGCGTTGGGATTTTTTTTA

OTTDART00000017937 (1) [ Show ]

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>tpe|OTTDART00000017937|OTTDARG00000014987|ZDB-GENE-060503-675 exosc5|OTTDARP00000015153 CH211-194N6.2-001 LG_ BX649594.7 Danio rerio protein_coding NOVEL, 705 bp
GAGCAGATTGTGCATGAGGACCGAGATGGAGCTGGAGCGA
AGTTGTCCAGTTTTAAGAGAATATGGAAGTGAACAGAGTT
TGTTATCAAGACCTGACGGGTCGTCCACGTTTGTACAAGG
GGACACGAGTATCCTGGCTGGAGTTTATGGACCAGCTGAG
GTTAAAGTCAGCAAGGAAATATATGATCGGGCAACTGTAG
AGGTCCTTATACAGCCCAAAATGGGGCTTCCAAGTGTCCG
CGAGCGAGCGAGAGAGCAGTGTGTCCGTGAGACTTGTGAA
GCTGCCCTTCTGTTGACCCTTCATCCACGCTCTTCTCTCA
CGGTCATCCTGCAGGTCGTCCACGATGATGGATCTCTGCT
GTCGTGTTGTCTAAACGCTGCCTGTATGGCTCTAATGGAT
GCCGGGCTGCCCATGAGCCGCCTTTTCTGTAGTGTGACCT
GCGCCATTAGCAAAGAGGGCCAGATAATCACTGACCCCAC
AGCTCGACAGGAAAAGGAAAGTCGAGCGCTGTTAACATTT
GCCATTGATAGCAATGAGCGCAATGTTTTGATGTCATCGA
CTACAGGCTCTTTTTCAGTGCAGGAGCTCCAGCAGTGCAT
CGCTATCAGTCAGAAGGCCTCGGAGCAAATCTTCCAGTTT
TATAGGGATTCTGTCAAGCGGCGATATTCAAAGATGCAAT
AAAATATGCGTTGGGATTTTTTTTA

Related Transcripts

Genome Build: GRCz11Chromosome: 18

Transcripts related to exosc5

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	exosc5-201	Ensembl		705 nt
mRNA	exosc5-202 (1) Ensembl	Ensembl		486 nt	Select Tool ZFIN BLAST

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Segment Relationships

Relationship	Marker Type	Marker	Citations
Contained in	BAC	CH211-194N6	ZFIN Curated Data

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Protein Products

No data available

Supporting Sequences

Type	Accession #	Sequence	Length (nt/aa)	Analysis
RNA	GenBank:CK360480 (1)		755 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Citations

Include unpublished citations

Slavotinek, A., Misceo, D., Htun, S., Mathisen, L., Frengen, E., Foreman, M., Hurtig, J.E., Enyenihi, L., Sterrett, M.C., Leung, S.W., Schneidman-Duhovny, D., Estrada-Veras, J., Duncan, J.L., Haaxma, C.A., Kamsteeg, E.J., Xia, V., Beleford, D., Si, Y., Douglas, G., Treidene, H.E., van Hoof, A., Fasken, M.B., Corbett, A.H. (2020) Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness. Human molecular genetics. 29:2218-2239

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