PUBLICATION
The Role of tRNA Fragments on Neurogenesis Alteration by H₂O₂-induced Oxidative Stress
- Authors
- Karacicek, B., Katkat, E., Binokay, L., Ozhan, G., Karakülah, G., Genc, S.
- ID
- ZDB-PUB-250412-13
- Date
- 2025
- Source
- Journal of molecular neuroscience : MN 75: 4747 (Journal)
- Registered Authors
- Katkat, Esra, Özhan, Günes
- Keywords
- H2O2, HyPer Zebrafish, NSCs, TRF-Glu-CTC, TRFs
- MeSH Terms
-
- Mouse Embryonic Stem Cells/cytology
- Mouse Embryonic Stem Cells/drug effects
- Mouse Embryonic Stem Cells/metabolism
- Cell Line
- Zebrafish
- Mice
- RNA, Transfer*/genetics
- Neurogenesis*
- Animals
- Embryo, Nonmammalian/cytology
- Embryo, Nonmammalian/drug effects
- Embryo, Nonmammalian/metabolism
- Oxidative Stress*
- Hydrogen Peroxide*/pharmacology
- PubMed
- 40216606 Full text @ J. Mol. Neurosci.
Citation
Karacicek, B., Katkat, E., Binokay, L., Ozhan, G., Karakülah, G., Genc, S. (2025) The Role of tRNA Fragments on Neurogenesis Alteration by H₂O₂-induced Oxidative Stress. Journal of molecular neuroscience : MN. 75:4747.
Abstract
Transfer RNAs (tRNAs) are small non-coding RNA molecules transcribed from tRNA genes. tRNAs cleaved into a diverse population tRNA fragments (tRFs) ranging in length from 18 to 40 nucleotides, they interact with RNA binding proteins and influence the stability and translation. Stress is one of the reasons for tRFs cleavage. In our study, we modeled oxidative stress conditions with hydrogen peroxide (H2O2) exposure and dealt with one of the frequently expressed tRF in the hippocampus region of the brain, which is tRF-Glu-CTC. For this purpose, neural stem cells (NSCs) were exposed to H2O2, and tRF-Glu-CTC levels were increased in various H2O2 concentrations. A decrease was seen in microtubule-associated protein 2 (MAP2) marker expression. To understand the H2O2 oxidative stress condition on the expression of tRNA fragments, 72 hpf zebrafish embryos exposed to different H2O2 concentrations, an increase in the level of tRF-Glu-CTC was observed in all concentrations of H2O2 compared to control. Subsequently, neurogenesis markers were figured out via Calb2a (calbindin 2a) in situ hybridization (ISH) and HuC/D immunofluorescence staining (IF) staining experiments. Under H2O2 exposure, a decline was observed in Calb2a and HuC/D markers. To understand the inhibitory role of tRF-Glu-CTC on neurogenesis, NSCs were transfected via tRF-Glu-CTC inhibitor, and neurogenesis markers (ßIII-tubulin, MAP2, and GFAP) were determined with qRT-PCR and IF staining. tRF-Glu-CTC inhibitor reversed the diminished neuronal markers expression under the exposure of H2O2. Gene Ontology (GO) enrichment analysis showed us that targets of tRF-Glu-CTC are generally related to neuronal function and synaptic processes.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping