PUBLICATION

Cell type-specific transcriptomic analysis by thiouracil tagging in zebrafish

Authors
Erickson, T., Nicolson, T.
ID
ZDB-PUB-160725-20
Date
2016
Source
Methods in cell biology   135: 309-28 (Chapter)
Registered Authors
Erickson, Timothy, Nicolson, Teresa
Keywords
Gene expression, RNA, TU-Tagging, Thiouracil, Transcriptomics, UPRT, Zebrafish
MeSH Terms
  • Animals
  • Cell Lineage/genetics*
  • Gene Expression Profiling/methods*
  • Gene Expression Regulation, Developmental
  • Larva/genetics
  • Larva/growth & development
  • Thiouracil/chemistry
  • Transcriptome/genetics*
  • Zebrafish/genetics*
  • Zebrafish/growth & development
PubMed
27443933 Full text @ Meth. Cell. Biol.
Abstract
Transcriptomic studies are important tools for understanding the development and function of the different cell types that make up complex tissues. Zebrafish (Danio rerio) is a valuable organism for modeling key aspects of vertebrate development, cell biology, and human disease. However, the small size of individual larvae and relative scarcity of certain cell types in zebrafish can hamper efforts to collect enough pure material for cell type-specific transcriptomic studies. Thus, there is a need in the zebrafish field for spatially and temporally resolved gene expression assays. This chapter will discuss the general principles behind the TU-tagging method to isolate cell type-specific RNAsĀ and provide guidance in designing and executing TU-tagging experiments in zebrafish.
Genes / Markers
Figures
Show all Figures
Expression
Phenotype
Mutation and Transgenics
Human Disease / Model Data
Sequence Targeting Reagents
Fish
Antibodies
Orthology
Engineered Foreign Genes
Mapping
Errata and Notes