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Figure Caption
Fig. 5. Pipeline for atlas building, pseudo-landmark generation, and transferring pseudo-landmarks to individual fish. Blue text notes the software used between each step. (1) Starting with µCT scans of wild-type fish, ANTs uses a series of rigid, affine, and deformable registrations to create an average image, or (2) Atlas. The PseudoLMGenerator tool in SlicerMorph was used to (3) place 372 pseudo-landmarks on the atlas. The ALPACA tool in SlicerMorph was used to (4) transfer points from the atlas to wild-type and bmp1a fish for comparisons between groups.
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