Figure 4

Figure 4

Weighted gene correlation network analysis of all filtered proteins. (A) Module-treatment relationship. Coefficients are indicated for |cor| > 0.4 and p < 0.05 with significance levels *p < 0.05, **p < 0.01, and ***p < 0.001. Numbers in brackets at the module names indicate the number of proteins in the modules. (B) Mean centered log₂-transformed intensities of all proteins and treatments from the module pink. (C) Log₂-transformed fold changes of 5 vacuolar proteins in the module pink identified from functional annotation analysis. (D) Log₂-transformed FC of six proteins involved in fin regeneration and mesenchymal development in the module red identified from functional annotation analysis. (E) Mean centered log₂-transformed intensities of all proteins and treatments from the module red.