Gene

tnn

ID

ZDB-GENE-990415-262

Name

tenascin N

Symbol

tnn Nomenclature History

Previous Names

etID309873.2 (1)
tenw
tnw (1)
zgc:110729

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tnn Human Ortholog

No data available

Associated With tnn Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020837	Fibrinogen, conserved site
Domain	IPR000742	EGF-like domain
Domain	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Domain	IPR003961	Fibronectin type III
Domain	IPR041161	Tenascin, EGF-like domain
Family	IPR050991	Extracellular Matrix Regulatory Proteins
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
Homologous_superfamily	IPR036056	Fibrinogen-like, C-terminal
Homologous_superfamily	IPR036116	Fibronectin type III superfamily

Domain Details Per Protein

Protein	Length	EGF-like domain	Extracellular Matrix Regulatory Proteins	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Fibrinogen, conserved site	Fibrinogen-like, C-terminal	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin-like fold	Tenascin, EGF-like domain
UniProtKB:A0A8M3B7S9 InterPro	932
UniProtKB:B0S6K5 InterPro	932
UniProtKB:B0S6K6 InterPro	844
UniProtKB:F1QSR3 InterPro	1020

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
antisense	ottdart00000059324 (1) Ensembl	Ensembl	461 nt	Select Tool ZFIN BLAST
mRNA	tnn-201 (1) Ensembl	Ensembl	3,253 nt	Select Tool ZFIN BLAST
mRNA	tnn-202 (1) Ensembl	Ensembl	3,554 nt	Select Tool ZFIN BLAST
mRNA	tnn-203 (1) Ensembl	Ensembl	3,323 nt	Select Tool ZFIN BLAST
ncRNA	tnw-003 (1) Ensembl	Ensembl	559 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations