Gene

col28a1b

ID

ZDB-GENE-160503-1

Name

collagen, type XXVIII, alpha 1b

Symbol

col28a1b Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in epidermis and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Gebauer et al., 2016

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With col28a1b Human Ortholog

No data available

Associated With col28a1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020901	Proteinase inhibitor I2, Kunitz, conserved site
Domain	IPR002035	von Willebrand factor, type A
Domain	IPR002223	Pancreatic trypsin inhibitor Kunitz domain
Family	IPR050938	Collagen and Collagen-like Structural Proteins
Homologous_superfamily	IPR036465	von Willebrand factor A-like domain superfamily
Homologous_superfamily	IPR036880	Pancreatic trypsin inhibitor Kunitz domain superfamily
Repeat	IPR008160	Collagen triple helix repeat

Domain Details Per Protein

Protein	Length	Collagen and Collagen-like Structural Proteins	Collagen triple helix repeat	Pancreatic trypsin inhibitor Kunitz domain	Pancreatic trypsin inhibitor Kunitz domain superfamily	Proteinase inhibitor I2, Kunitz, conserved site	von Willebrand factor A-like domain superfamily	von Willebrand factor, type A
UniProtKB:A0A060Q6E4 InterPro	1109

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	col28a1b-201 (1) Ensembl	Ensembl		3,330 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-col28a1b		col28a1b		Rabbit	IHC WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations